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The UCSC Genome Browser database: extensions and updates 2013

Overview of attention for article published in Nucleic Acids Research, November 2012
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (90th percentile)
  • High Attention Score compared to outputs of the same age and source (91st percentile)

Mentioned by

blogs
1 blog
twitter
11 X users
facebook
1 Facebook page

Citations

dimensions_citation
695 Dimensions

Readers on

mendeley
428 Mendeley
citeulike
6 CiteULike
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Title
The UCSC Genome Browser database: extensions and updates 2013
Published in
Nucleic Acids Research, November 2012
DOI 10.1093/nar/gks1048
Pubmed ID
Authors

Laurence R. Meyer, Ann S. Zweig, Angie S. Hinrichs, Donna Karolchik, Robert M. Kuhn, Matthew Wong, Cricket A. Sloan, Kate R. Rosenbloom, Greg Roe, Brooke Rhead, Brian J. Raney, Andy Pohl, Venkat S. Malladi, Chin H. Li, Brian T. Lee, Katrina Learned, Vanessa Kirkup, Fan Hsu, Steve Heitner, Rachel A. Harte, Maximilian Haeussler, Luvina Guruvadoo, Mary Goldman, Belinda M. Giardine, Pauline A. Fujita, Timothy R. Dreszer, Mark Diekhans, Melissa S. Cline, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent

Abstract

The University of California Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and annotations for a wide variety of organisms. The Browser is an integrated tool set for visualizing, comparing, analysing and sharing both publicly available and user-generated genomic datasets. As of September 2012, genomic sequence and a basic set of annotation 'tracks' are provided for 63 organisms, including 26 mammals, 13 non-mammal vertebrates, 3 invertebrate deuterostomes, 13 insects, 6 worms, yeast and sea hare. In the past year 19 new genome assemblies have been added, and we anticipate releasing another 28 in early 2013. Further, a large number of annotation tracks have been either added, updated by contributors or remapped to the latest human reference genome. Among these are an updated UCSC Genes track for human and mouse assemblies. We have also introduced several features to improve usability, including new navigation menus. This article provides an update to the UCSC Genome Browser database, which has been previously featured in the Database issue of this journal.

X Demographics

X Demographics

The data shown below were collected from the profiles of 11 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 428 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 12 3%
United Kingdom 6 1%
Germany 3 <1%
Canada 3 <1%
Spain 2 <1%
Japan 2 <1%
France 2 <1%
India 2 <1%
Sweden 1 <1%
Other 12 3%
Unknown 383 89%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 120 28%
Researcher 100 23%
Student > Master 51 12%
Student > Bachelor 34 8%
Other 19 4%
Other 67 16%
Unknown 37 9%
Readers by discipline Count As %
Agricultural and Biological Sciences 195 46%
Biochemistry, Genetics and Molecular Biology 87 20%
Medicine and Dentistry 31 7%
Computer Science 30 7%
Neuroscience 8 2%
Other 31 7%
Unknown 46 11%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 15. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 13 February 2013.
All research outputs
#2,439,088
of 25,837,817 outputs
Outputs from Nucleic Acids Research
#2,692
of 27,769 outputs
Outputs of similar age
#16,450
of 196,012 outputs
Outputs of similar age from Nucleic Acids Research
#31
of 373 outputs
Altmetric has tracked 25,837,817 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 90th percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 27,769 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 7.2. This one has done particularly well, scoring higher than 90% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 196,012 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 90% of its contemporaries.
We're also able to compare this research output to 373 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 91% of its contemporaries.