Title |
Does centrifugation matter? Centrifugal force and spinning time alter the plasma metabolome
|
---|---|
Published in |
Metabolomics, September 2016
|
DOI | 10.1007/s11306-016-1109-3 |
Pubmed ID | |
Authors |
Dorothea Lesche, Roland Geyer, Daniel Lienhard, Christos T. Nakas, Gaëlle Diserens, Peter Vermathen, Alexander B. Leichtle |
Abstract |
Centrifugation is an indispensable procedure for plasma sample preparation, but applied conditions can vary between labs. Determine whether routinely used plasma centrifugation protocols (1500×g 10 min; 3000×g 5 min) influence non-targeted metabolomic analyses. Nuclear magnetic resonance spectroscopy (NMR) and High Resolution Mass Spectrometry (HRMS) data were evaluated with sparse partial least squares discriminant analyses and compared with cell count measurements. Besides significant differences in platelet count, we identified substantial alterations in NMR and HRMS data related to the different centrifugation protocols. Already minor differences in plasma centrifugation can significantly influence metabolomic patterns and potentially bias metabolomics studies. |
X Demographics
Geographical breakdown
Country | Count | As % |
---|---|---|
United States | 4 | 27% |
Spain | 2 | 13% |
India | 1 | 7% |
Unknown | 8 | 53% |
Demographic breakdown
Type | Count | As % |
---|---|---|
Members of the public | 9 | 60% |
Scientists | 4 | 27% |
Science communicators (journalists, bloggers, editors) | 2 | 13% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
Sweden | 1 | 1% |
Germany | 1 | 1% |
South Africa | 1 | 1% |
Unknown | 86 | 97% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Student > Master | 15 | 17% |
Student > Bachelor | 15 | 17% |
Researcher | 14 | 16% |
Student > Ph. D. Student | 6 | 7% |
Student > Doctoral Student | 5 | 6% |
Other | 17 | 19% |
Unknown | 17 | 19% |
Readers by discipline | Count | As % |
---|---|---|
Biochemistry, Genetics and Molecular Biology | 17 | 19% |
Agricultural and Biological Sciences | 15 | 17% |
Chemistry | 12 | 13% |
Medicine and Dentistry | 5 | 6% |
Immunology and Microbiology | 4 | 4% |
Other | 15 | 17% |
Unknown | 21 | 24% |