Research in computational molecular biology : 11th annual international conference, RECOMB 2007, Oakland, CA, USA, April 21-25, 2007 : proceedings

Table of Contents

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   Book Overview
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   Chapter 1 QNet: A Tool for Querying Protein Interaction Networks
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   Chapter 2 Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology
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   Chapter 3 Research in Computational Molecular Biology
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   Chapter 4 Network Legos: Building Blocks of Cellular Wiring Diagrams
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   Chapter 5 An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and in silico Gene Perturbation Experiments
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   Chapter 6 A Feature-Based Approach to Modeling Protein-DNA Interactions
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   Chapter 7 Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking
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   Chapter 8 Research in Computational Molecular Biology
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    Chapter 9 Framework for Identifying Common Aberrations in DNA Copy Number Data
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    Chapter 10 Estimating Genome-Wide Copy Number Using Allele Specific Mixture Models
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    Chapter 11 GIMscan: A New Statistical Method for Analyzing Whole-Genome Array CGH Data
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    Chapter 12 Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions
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    Chapter 13 Shift-Invariant Adaptive Double Threading: Learning MHC II - Peptide Binding
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    Chapter 14 Reconstructing the Phylogeny of Mobile Elements
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    Chapter 15 Beyond Galled Trees - Decomposition and Computation of Galled Networks
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    Chapter 16 Variational Upper Bounds for Probabilistic Phylogenetic Models
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    Chapter 17 Heuristics for the Gene-Duplication Problem: A Θ ( n ) Speed-Up for the Local Search
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    Chapter 18 Support Vector Training of Protein Alignment Models
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    Chapter 19 Tools for Simulating and Analyzing RNA Folding Kinetics
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    Chapter 20 Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences
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    Chapter 21 Connectedness Profiles in Protein Networks for the Analysis of Gene Expression Data
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    Chapter 22 Multivariate Segmentation in the Analysis of Transcription Tiling Array Data
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    Chapter 23 A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements
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    Chapter 24 Rearrangements in Genomes with Centromeres Part I: Translocations
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    Chapter 25 Identification of Deletion Polymorphisms from Haplotypes
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    Chapter 26 Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation
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    Chapter 27 Minimizing and Learning Energy Functions for Side-Chain Prediction
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    Chapter 28 Protein Conformational Flexibility Analysis with Noisy Data
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    Chapter 29 Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules
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    Chapter 30 Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments
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    Chapter 31 Improved Ranking Functions for Protein and Modification-Site Identifications
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    Chapter 32 Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions
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    Chapter 33 A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data
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    Chapter 34 Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms
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    Chapter 35 An Efficient and Accurate Graph-Based Approach to Detect Population Substructure
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    Chapter 36 RB-Finder: An Improved Distance-Based Sliding Window Method to Detect Recombination Breakpoints
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    Chapter 37 Comparative Analysis of Spatial Patterns of Gene Expression in Drosophila melanogaster Imaginal Discs