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Plant Proteomics

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Cover of 'Plant Proteomics'

Table of Contents

  1. Altmetric Badge
    Book Overview
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    Chapter 1 Plant Proteomics Methods and Protocols
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    Chapter 2 From Proteomics to Systems Biology: MAPA, MASS WESTERN, PROMEX, and COVAIN as a User-Oriented Platform
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    Chapter 3 Plant Proteomics: From Genome Sequencing to Proteome Databases and Repositories
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    Chapter 4 How to Use 2D Gel Electrophoresis in Plant Proteomics
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    Chapter 5 Standardization of Data Processing and Statistical Analysis in Comparative Plant Proteomics Experiment
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    Chapter 6 The Expanding Universe of Mass Analyzer Configurations for Biological Analysis
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    Chapter 7 A Protocol for Protein Extraction from Lipid-Rich Plant Tissues Suitable for Electrophoresis
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    Chapter 8 Making a Protein Extract from Plant Pathogenic Fungi for Gel- and LC-Based Proteomics
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    Chapter 9 Plant Proteomics Methods to Reach Low-Abundance Proteins
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    Chapter 10 Combination of 2DE and LC for Plant Proteomics Analysis
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    Chapter 11 2DE Analysis of Forest Tree Proteins Using Fluorescent Labels and Multiplexing
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    Chapter 12 Differential Plant Proteome Analysis by Isobaric Tags for Relative and Absolute Quantitation (iTRAQ)
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    Chapter 13 Global Quantitative Proteomics Using Spectral Counting: An Inexpensive Experimental and Bioinformatics Workflow for Deep Proteome Coverage
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    Chapter 14 Combining Chymotrypsin/Trypsin Digestion to Identify Hydrophobic Proteins from Oil Bodies
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    Chapter 15 Mass Western for Absolute Quantification of Target Proteins and Considerations About the Instrument of Choice
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    Chapter 16 Plant Proteomics
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    Chapter 17 Mass Spectrometry-Based Imaging of Metabolites and Proteins
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    Chapter 18 Using the Yeast Two-Hybrid System to Identify Protein–Protein Interactions
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    Chapter 19 Modifications of Wheat Germ Cell-Free System for Functional Proteomics of Plant Membrane Proteins
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    Chapter 20 Arabidopsis Proteomics: A Simple and Standardizable Workflow for Quantitative Proteome Characterization
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    Chapter 21 Analysis of Rice Proteins Using SDS-PAGE Shotgun Proteomics.
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    Chapter 22 Plant Proteomics
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    Chapter 23 Soybean Proteomics
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    Chapter 24 Proteome Analysis of Orphan Plant Species, Fact or Fiction?
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    Chapter 25 An Improved Detergent-Compatible Gel-Fractionation LC-LTQ-Orbitrap-MS Workflow for Plant and Microbial Proteomics
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    Chapter 26 Seed Proteomics
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    Chapter 27 Back to Osborne. Sequential Protein Extraction and LC-MS Analysis for the Characterization of the Holm Oak Seed Proteome
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    Chapter 28 Xylem Sap Proteomics
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    Chapter 29 Suspension-Cultured Plant Cells as a Tool to Analyze the Extracellular Proteome
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    Chapter 30 Pollen Cultivation and Preparation for Proteomic Studies
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    Chapter 31 Isolation of the Plant Cytosolic Fraction for Proteomic Analysis
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    Chapter 32 Quantitative Proteomic Analysis of Intact Plastids
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    Chapter 33 Shotgun Proteomics of Plant Plasma Membrane and Microdomain Proteins Using Nano-LC-MS/MS
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    Chapter 34 Plant Mitochondrial Proteomics
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    Chapter 35 Separation of the plant Golgi apparatus and endoplasmic reticulum by free-flow electrophoresis.
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    Chapter 36 Isolation of Leaf Peroxisomes from Arabidopsis for Organelle Proteome Analyses
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    Chapter 37 Proteomics of Field Samples in Radioactive Chernobyl Area
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    Chapter 38 Differential Proteome and Secretome Analysis During Rice–Pathogen Interaction
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    Chapter 39 Protein Extraction and Gel-Based Separation Methods to Analyze Responses to Pathogens in Carnation ( Dianthus caryophyllus L)
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    Chapter 40 StageTip-Based HAMMOC, an Efficient and Inexpensive Phosphopeptide Enrichment Method for Plant Shotgun Phosphoproteomics
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    Chapter 41 Simultaneous Identification and Quantification of Nitrosylation Sites by Combination of Biotin Switch and ICAT Labeling
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    Chapter 42 Tandem Metal-Oxide Affinity Chromatography for Enhanced Depth of Phosphoproteome Analysis
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    Chapter 43 N-Glycoprotein Enrichment by Lectin Affinity Chromatography
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    Chapter 44 Rapid and High-Throughput N -Glycomic Analysis of Plant Glycoproteins
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    Chapter 45 Assay for Proteasome-Dependent Protein Degradation and Ubiquitinated Proteins
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    Chapter 46 Separation of Membrane Protein Complexes by Native LDS-PAGE
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    Chapter 47 Identification of Thioredoxin Target Disulfides Using Isotope-Coded Affinity Tags
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    Chapter 48 Class III Peroxidases
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    Chapter 49 Proteotyping of Holm Oak ( Quercus ilex subsp. ballota ) Provenances Through Proteomic Analysis of Acorn Flour
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    Chapter 50 Immunoproteomics analysis of food allergens.
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    Chapter 51 Beer and wort proteomics.
  53. Altmetric Badge
    Chapter 52 Precipitation of Champagne Base Wine Proteins Prior to 2D Electrophoresis
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    Chapter 53 The Minimal Information About a Proteomics Experiment (MIAPE) from the Proteomics Standards Initiative
Attention for Chapter 43: N-Glycoprotein Enrichment by Lectin Affinity Chromatography
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Chapter title
N-Glycoprotein Enrichment by Lectin Affinity Chromatography
Chapter number 43
Book title
Plant Proteomics
Published in
Methods in molecular biology, January 2014
DOI 10.1007/978-1-62703-631-3_43
Pubmed ID
Book ISBNs
978-1-62703-630-6, 978-1-62703-631-3
Authors

Eliel Ruiz-May, Carmen Catalá, Jocelyn K. C. Rose, Ruiz-May, Eliel, Catalá, Carmen, Rose, Jocelyn K. C.

Abstract

Lectins are proteins that bind to sugars with varying specificities and several have been identified that show differential binding to structurally variable glycans attached to glycoproteins. Consequently, lectin affinity chromatography represents a valuable tool for glycoproteome studies, allowing enrichment of glycoproteins in samples prior to their identification by mass spectrometry (MS). From the perspective of plant scientists, lectin enrichment has proven useful for studies of the proteomes of the secretory pathways and cell wall, due to the high proportion of constituent proteins that are glycosylated. This chapter outlines a strategy to generate samples enriched with glycoproteins from bulk plant tissues prior to further characterization by MS, or other techniques.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 18 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 18 100%

Demographic breakdown

Readers by professional status Count As %
Student > Master 3 17%
Student > Bachelor 2 11%
Student > Postgraduate 2 11%
Student > Ph. D. Student 2 11%
Professor 1 6%
Other 3 17%
Unknown 5 28%
Readers by discipline Count As %
Agricultural and Biological Sciences 4 22%
Chemistry 4 22%
Biochemistry, Genetics and Molecular Biology 3 17%
Unspecified 1 6%
Medicine and Dentistry 1 6%
Other 0 0%
Unknown 5 28%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 01 November 2013.
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#18,353,475
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Outputs of similar age from Methods in molecular biology
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