Title |
The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure
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Published in |
Nature Communications, April 2014
|
DOI | 10.1038/ncomms4706 |
Pubmed ID | |
Authors |
Sateesh Kagale, Chushin Koh, John Nixon, Venkatesh Bollina, Wayne E. Clarke, Reetu Tuteja, Charles Spillane, Stephen J. Robinson, Matthew G. Links, Carling Clarke, Erin E. Higgins, Terry Huebert, Andrew G. Sharpe, Isobel A. P. Parkin |
Abstract |
Camelina sativa is an oilseed with desirable agronomic and oil-quality attributes for a viable industrial oil platform crop. Here we generate the first chromosome-scale high-quality reference genome sequence for C. sativa and annotated 89,418 protein-coding genes, representing a whole-genome triplication event relative to the crucifer model Arabidopsis thaliana. C. sativa represents the first crop species to be sequenced from lineage I of the Brassicaceae. The well-preserved hexaploid genome structure of C. sativa surprisingly mirrors those of economically important amphidiploid Brassica crop species from lineage II as well as wheat and cotton. The three genomes of C. sativa show no evidence of fractionation bias and limited expression-level bias, both characteristics commonly associated with polyploid evolution. The highly undifferentiated polyploid genome of C. sativa presents significant consequences for breeding and genetic manipulation of this industrial oil crop. |
X Demographics
Geographical breakdown
Country | Count | As % |
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Canada | 5 | 36% |
United States | 2 | 14% |
Germany | 2 | 14% |
Ireland | 1 | 7% |
United Kingdom | 1 | 7% |
Unknown | 3 | 21% |
Demographic breakdown
Type | Count | As % |
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Members of the public | 7 | 50% |
Scientists | 7 | 50% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
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United States | 3 | 1% |
Germany | 2 | <1% |
Canada | 2 | <1% |
Switzerland | 1 | <1% |
Netherlands | 1 | <1% |
United Kingdom | 1 | <1% |
Colombia | 1 | <1% |
Saudi Arabia | 1 | <1% |
Israel | 1 | <1% |
Other | 0 | 0% |
Unknown | 270 | 95% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Researcher | 68 | 24% |
Student > Ph. D. Student | 44 | 16% |
Student > Master | 35 | 12% |
Student > Bachelor | 23 | 8% |
Professor > Associate Professor | 16 | 6% |
Other | 42 | 15% |
Unknown | 55 | 19% |
Readers by discipline | Count | As % |
---|---|---|
Agricultural and Biological Sciences | 138 | 49% |
Biochemistry, Genetics and Molecular Biology | 61 | 22% |
Engineering | 4 | 1% |
Chemistry | 4 | 1% |
Immunology and Microbiology | 2 | <1% |
Other | 15 | 5% |
Unknown | 59 | 21% |