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Argonaute Proteins

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Cover of 'Argonaute Proteins'

Table of Contents

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    Book Overview
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    Chapter 1 Cloning and Identification of Recombinant Argonaute-Bound Small RNAs Using Next-Generation Sequencing
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    Chapter 2 Quantification of miRNAs Co-Immunoprecipitated with Argonaute Proteins Using SYBR Green-Based qRT-PCR
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    Chapter 3 Gateway to Understanding Argonaute Loading of Single-Stranded RNAs: Preparation of Deep Sequencing Libraries with In Vitro Loading Samples
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    Chapter 4 Dumbbell-PCR for Discriminative Quantification of a Small RNA Variant
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    Chapter 5 MicroRNA Detection by Whole-Mount In Situ Hybridization in C. elegans
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    Chapter 6 cCLIP-Seq: Retrieval of Chimeric Reads from HITS-CLIP (CLIP-Seq) Libraries
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    Chapter 7 Kinetic Analysis of Small Silencing RNA Production by Human and Drosophila Dicer Enzymes In Vitro
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    Chapter 8 Nucleic Acid-Binding Assay of Argonaute Protein Using Fluorescence Polarization
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    Chapter 9 Reconstitution of RNA Interference Machinery
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    Chapter 10 Single-Molecule Analysis for RISC Assembly and Target Cleavage
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    Chapter 11 Profiling Open Chromatin Structure in the Ovarian Somatic Cells Using ATAC-seq
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    Chapter 12 Assessing miR-451 Activity and Its Role in Erythropoiesis
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    Chapter 13 Functional Analysis of MicroRNAs in Neurogenesis During Mouse Cortical Development
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    Chapter 14 Cellular Approaches in Investigating Argonaute2-Dependent RNA Silencing
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    Chapter 15 Genomic Tagging of AGO1 Using CRISPR/Cas9-Mediated Homologous Recombination
  17. Altmetric Badge
    Chapter 16 Accurate Profiling and Quantification of tRNA Fragments from RNA-Seq Data: A Vade Mecum for MINTmap
Attention for Chapter 4: Dumbbell-PCR for Discriminative Quantification of a Small RNA Variant
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Chapter title
Dumbbell-PCR for Discriminative Quantification of a Small RNA Variant
Chapter number 4
Book title
Argonaute Proteins
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7339-2_4
Pubmed ID
Book ISBNs
978-1-4939-7338-5, 978-1-4939-7339-2
Authors

Megumi Shigematsu, Shozo Honda, Yohei Kirino

Abstract

Cellular RNAs are often expressed as multiple isoforms of complex heterogeneity in both length and terminal sequences. IsomiRs, the isoforms of microRNAs, are such an example. Distinct quantification of each RNA variant is necessary to unravel the biogenesis mechanism and biological significance of heterogenetic RNA expression. Here we describe Dumbbell-PCR (Db-PCR), a TaqMan RT-PCR-based method that distinctively quantifies a specific small RNA variant with single-nucleotide resolution at terminal sequences. Db-PCR enables the quantitative analysis of RNA terminal heterogeneity without performing Next-Generation Sequencing.

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The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 14 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 14 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 3 21%
Student > Bachelor 3 21%
Student > Master 2 14%
Other 1 7%
Professor 1 7%
Other 0 0%
Unknown 4 29%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 6 43%
Agricultural and Biological Sciences 3 21%
Unknown 5 36%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 17 October 2017.
All research outputs
#20,450,513
of 23,006,268 outputs
Outputs from Methods in molecular biology
#9,941
of 13,160 outputs
Outputs of similar age
#378,088
of 442,254 outputs
Outputs of similar age from Methods in molecular biology
#1,193
of 1,498 outputs
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We're also able to compare this research output to 1,498 others from the same source and published within six weeks on either side of this one. This one is in the 1st percentile – i.e., 1% of its contemporaries scored the same or lower than it.