| Title |
A Comprehensive High-Resolution Targeted Workflow for the Deep Profiling of Sphingolipids
|
|---|---|
| Published in |
Analytical Chemistry, November 2017
|
| DOI | 10.1021/acs.analchem.7b03576 |
| Pubmed ID | |
| Authors | |
| Abstract |
Sphingolipids are a highly diverse group of biomolecules that are not only membrane components but are also involved in various cellular functions such as signaling and protein sorting. In order to obtain a quantitative view of the sphingolipidome, sensitive, accurate and comprehensive methods are needed. Here, we present a targeted reversed-phase liquid chromatography/high resolution mass spectrometry-based workflow that significantly increases the accuracy of measured sphingolipids by resolving nearly-isobaric and isobaric species; this is accomplished by a use of: i) an optimized extraction procedure, ii) a segmented gradient and iii) parallel reaction monitoring of a sphingolipid specific fragmentation pattern. The workflow was benchmarked against an accepted sphingolipid model system, the RAW 264.7 cell line, and 61 sphingolipids were quantified over a dynamic range of seven orders of magnitude, with detection limits in the low fmol/mg protein level, making this workflow an extremely versatile tool for high-throughput sphingolipidomics. |
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X Demographics
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| United Kingdom | 2 | 29% |
| Austria | 1 | 14% |
| China | 1 | 14% |
| Germany | 1 | 14% |
| United States | 1 | 14% |
| Unknown | 1 | 14% |
Demographic breakdown
| Type | Count | As % |
|---|---|---|
| Scientists | 4 | 57% |
| Members of the public | 2 | 29% |
| Science communicators (journalists, bloggers, editors) | 1 | 14% |
Mendeley demographics
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| Unknown | 46 | 100% |
Demographic breakdown
| Readers by professional status | Count | As % |
|---|---|---|
| Student > Ph. D. Student | 6 | 13% |
| Student > Master | 6 | 13% |
| Student > Doctoral Student | 4 | 9% |
| Professor | 4 | 9% |
| Researcher | 4 | 9% |
| Other | 8 | 17% |
| Unknown | 14 | 30% |
| Readers by discipline | Count | As % |
|---|---|---|
| Chemistry | 11 | 24% |
| Biochemistry, Genetics and Molecular Biology | 7 | 15% |
| Pharmacology, Toxicology and Pharmaceutical Science | 6 | 13% |
| Agricultural and Biological Sciences | 3 | 7% |
| Immunology and Microbiology | 2 | 4% |
| Other | 2 | 4% |
| Unknown | 15 | 33% |