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Integrating multiple ‘omics’ analysis for microbial biology: application and methodologies

Overview of attention for article published in Microbiology, November 2009
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (90th percentile)
  • High Attention Score compared to outputs of the same age and source (89th percentile)

Mentioned by

policy
1 policy source
patent
7 patents
wikipedia
1 Wikipedia page

Citations

dimensions_citation
395 Dimensions

Readers on

mendeley
927 Mendeley
citeulike
8 CiteULike
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Title
Integrating multiple ‘omics’ analysis for microbial biology: application and methodologies
Published in
Microbiology, November 2009
DOI 10.1099/mic.0.034793-0
Pubmed ID
Authors

Weiwen Zhang, Feng Li, Lei Nie

Abstract

Recent advances in various 'omics' technologies enable quantitative monitoring of the abundance of various biological molecules in a high-throughput manner, and thus allow determination of their variation between different biological states on a genomic scale. Several popular 'omics' platforms that have been used in microbial systems biology include transcriptomics, which measures mRNA transcript levels; proteomics, which quantifies protein abundance; metabolomics, which determines abundance of small cellular metabolites; interactomics, which resolves the whole set of molecular interactions in cells; and fluxomics, which establishes dynamic changes of molecules within a cell over time. However, no single 'omics' analysis can fully unravel the complexities of fundamental microbial biology. Therefore, integration of multiple layers of information, the multi-'omics' approach, is required to acquire a precise picture of living micro-organisms. In spite of this being a challenging task, some attempts have been made recently to integrate heterogeneous 'omics' datasets in various microbial systems and the results have demonstrated that the multi-'omics' approach is a powerful tool for understanding the functional principles and dynamics of total cellular systems. This article reviews some basic concepts of various experimental 'omics' approaches, recent application of the integrated 'omics' for exploring metabolic and regulatory mechanisms in microbes, and advances in computational and statistical methodologies associated with integrated 'omics' analyses. Online databases and bioinformatic infrastructure available for integrated 'omics' analyses are also briefly discussed.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 927 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 13 1%
United Kingdom 10 1%
Germany 6 <1%
Belgium 5 <1%
Denmark 5 <1%
Sweden 5 <1%
Canada 5 <1%
Brazil 4 <1%
India 3 <1%
Other 22 2%
Unknown 849 92%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 241 26%
Researcher 213 23%
Student > Master 126 14%
Student > Bachelor 67 7%
Student > Doctoral Student 51 6%
Other 141 15%
Unknown 88 9%
Readers by discipline Count As %
Agricultural and Biological Sciences 419 45%
Biochemistry, Genetics and Molecular Biology 141 15%
Computer Science 45 5%
Engineering 31 3%
Chemistry 31 3%
Other 145 16%
Unknown 115 12%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 12. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 06 February 2024.
All research outputs
#2,863,790
of 25,373,627 outputs
Outputs from Microbiology
#255
of 5,709 outputs
Outputs of similar age
#9,835
of 106,663 outputs
Outputs of similar age from Microbiology
#4
of 37 outputs
Altmetric has tracked 25,373,627 research outputs across all sources so far. Compared to these this one has done well and is in the 88th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 5,709 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.2. This one has done particularly well, scoring higher than 94% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 106,663 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 90% of its contemporaries.
We're also able to compare this research output to 37 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 89% of its contemporaries.