| Chapter title |
Skim-based genotyping by sequencing.
|
|---|---|
| Chapter number | 19 |
| Book title |
Plant Genotyping
|
| Published in |
Methods in molecular biology, October 2014
|
| DOI | 10.1007/978-1-4939-1966-6_19 |
| Pubmed ID | |
| Book ISBNs |
978-1-4939-1965-9, 978-1-4939-1966-6
|
| Authors |
Agnieszka A Golicz, Philipp E Bayer, David Edwards, Golicz, Agnieszka A., Bayer, Philipp E., Edwards, David, Agnieszka A. Golicz, Philipp E. Bayer |
| Abstract |
Genotyping by sequencing (GBS) is a relatively new method used to determine the differences in the genetic makeup of individuals. Its novelty stems from a combination of two already available methods: genotyping and next-generation sequencing. Depending on the individual study design GBS protocols can take multiple forms, however most share a sequence of core steps that have to be undertaken. These include: sequencing of the DNA from the individuals of interest (usually two parents of a mapping population and their progeny), mapping of the sequencing reads to the reference sequence, SNP calling and filtering, SNP genotyping and imputation, followed by haplotype identification and downstream analysis. GBS has a range of applications from general marker discovery, haplotype identification, and recombination characterization to quantitative trait locus (QTL) analysis, genome-wide association studies (GWAS), and genomic selection (GS). It has already been applied to a range of plant species including: rice, maize, artichoke, and Arabidopsis thaliana. It is a promising approach which is likely to provide new and important insights into plant biology. |
X Demographics
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| India | 1 | 50% |
| Unknown | 1 | 50% |
Demographic breakdown
| Type | Count | As % |
|---|---|---|
| Members of the public | 2 | 100% |
Mendeley readers
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| Netherlands | 1 | 2% |
| Norway | 1 | 2% |
| Unknown | 53 | 96% |
Demographic breakdown
| Readers by professional status | Count | As % |
|---|---|---|
| Researcher | 13 | 24% |
| Student > Ph. D. Student | 9 | 16% |
| Student > Master | 5 | 9% |
| Student > Bachelor | 3 | 5% |
| Student > Doctoral Student | 3 | 5% |
| Other | 7 | 13% |
| Unknown | 15 | 27% |
| Readers by discipline | Count | As % |
|---|---|---|
| Agricultural and Biological Sciences | 28 | 51% |
| Biochemistry, Genetics and Molecular Biology | 5 | 9% |
| Unspecified | 1 | 2% |
| Environmental Science | 1 | 2% |
| Veterinary Science and Veterinary Medicine | 1 | 2% |
| Other | 3 | 5% |
| Unknown | 16 | 29% |