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Evaluation of viral genome assembly and diversity estimation in deep metagenomes

Overview of attention for article published in BMC Genomics, November 2014
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • Good Attention Score compared to outputs of the same age (78th percentile)
  • High Attention Score compared to outputs of the same age and source (80th percentile)

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11 X users

Citations

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32 Dimensions

Readers on

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119 Mendeley
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2 CiteULike
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Title
Evaluation of viral genome assembly and diversity estimation in deep metagenomes
Published in
BMC Genomics, November 2014
DOI 10.1186/1471-2164-15-989
Pubmed ID
Authors

Daniel Aguirre de Cárcer, Florent E Angly, Antonio Alcamí

Abstract

Viruses have unique properties, small genome and regions of high similarity, whose effects on metagenomic assemblies have not been characterized so far. This study uses diverse in silico simulated viromes to evaluate how extensively genomes can be assembled using different sequencing platforms and assemblers. Further, it investigates the suitability of different methods to estimate viral diversity in metagenomes.

X Demographics

X Demographics

The data shown below were collected from the profiles of 11 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 119 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Brazil 3 3%
United States 2 2%
United Kingdom 2 2%
Italy 1 <1%
Turkey 1 <1%
Switzerland 1 <1%
Sweden 1 <1%
Japan 1 <1%
Mexico 1 <1%
Other 0 0%
Unknown 106 89%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 33 28%
Researcher 27 23%
Student > Master 15 13%
Professor > Associate Professor 8 7%
Student > Doctoral Student 6 5%
Other 16 13%
Unknown 14 12%
Readers by discipline Count As %
Agricultural and Biological Sciences 56 47%
Biochemistry, Genetics and Molecular Biology 19 16%
Immunology and Microbiology 9 8%
Computer Science 7 6%
Environmental Science 4 3%
Other 7 6%
Unknown 17 14%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 6. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 07 July 2015.
All research outputs
#6,276,220
of 25,374,917 outputs
Outputs from BMC Genomics
#2,334
of 11,244 outputs
Outputs of similar age
#78,783
of 369,893 outputs
Outputs of similar age from BMC Genomics
#71
of 362 outputs
Altmetric has tracked 25,374,917 research outputs across all sources so far. Compared to these this one has done well and is in the 75th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 11,244 research outputs from this source. They receive a mean Attention Score of 4.8. This one has done well, scoring higher than 78% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 369,893 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 78% of its contemporaries.
We're also able to compare this research output to 362 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 80% of its contemporaries.