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Guideline to reference gene selection for quantitative real-time PCR

Overview of attention for article published in Biochemical & Biophysical Research Communications, January 2004
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  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (97th percentile)
  • High Attention Score compared to outputs of the same age and source (98th percentile)

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15 X users
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7 patents
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5 Wikipedia pages

Citations

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1373 Dimensions

Readers on

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1638 Mendeley
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5 CiteULike
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1 Connotea
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Title
Guideline to reference gene selection for quantitative real-time PCR
Published in
Biochemical & Biophysical Research Communications, January 2004
DOI 10.1016/j.bbrc.2003.11.177
Pubmed ID
Authors

Aleksandar Radonić, Stefanie Thulke, Ian M Mackay, Olfert Landt, Wolfgang Siegert, Andreas Nitsche

Abstract

Today, quantitative real-time PCR is the method of choice for rapid and reliable quantification of mRNA transcription. However, for an exact comparison of mRNA transcription in different samples or tissues it is crucial to choose the appropriate reference gene. Recently glyceraldehyde 3-phosphate dehydrogenase and beta-actin have been used for that purpose. However, it has been reported that these genes as well as alternatives, like rRNA genes, are unsuitable references, because their transcription is significantly regulated in various experimental settings and variable in different tissues. Therefore, quantitative real-time PCR was used to determine the mRNA transcription profiles of 13 putative reference genes, comparing their transcription in 16 different tissues and in CCRF-HSB-2 cells stimulated with 12-O-tetradecanoylphorbol-13-acetate and ionomycin. Our results show that "Classical" reference genes are indeed unsuitable, whereas the RNA polymerase II gene was the gene with the most constant expression in different tissues and following stimulation in CCRF-HSB-2 cells.

X Demographics

X Demographics

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 1,638 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Germany 18 1%
United States 13 <1%
United Kingdom 10 <1%
Mexico 9 <1%
India 9 <1%
Spain 8 <1%
Brazil 8 <1%
Canada 7 <1%
France 5 <1%
Other 46 3%
Unknown 1505 92%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 415 25%
Researcher 330 20%
Student > Master 240 15%
Student > Bachelor 137 8%
Student > Doctoral Student 104 6%
Other 250 15%
Unknown 162 10%
Readers by discipline Count As %
Agricultural and Biological Sciences 850 52%
Biochemistry, Genetics and Molecular Biology 276 17%
Medicine and Dentistry 125 8%
Environmental Science 35 2%
Immunology and Microbiology 30 2%
Other 116 7%
Unknown 206 13%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 20. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 04 December 2023.
All research outputs
#1,833,515
of 25,377,790 outputs
Outputs from Biochemical & Biophysical Research Communications
#228
of 26,637 outputs
Outputs of similar age
#3,723
of 143,820 outputs
Outputs of similar age from Biochemical & Biophysical Research Communications
#5
of 222 outputs
Altmetric has tracked 25,377,790 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 92nd percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 26,637 research outputs from this source. They receive a mean Attention Score of 4.5. This one has done particularly well, scoring higher than 99% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 143,820 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 97% of its contemporaries.
We're also able to compare this research output to 222 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 98% of its contemporaries.