Title |
Genome editing in Kluyveromyces and Ogataea yeasts using a broad-host-range Cas9/gRNA co-expression plasmid
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Published in |
FEMS Yeast Research, February 2018
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DOI | 10.1093/femsyr/foy012 |
Pubmed ID | |
Authors |
Hannes Juergens, Javier A Varela, Arthur R Gorter de Vries, Thomas Perli, Veronica J M Gast, Nikola Y Gyurchev, Arun S Rajkumar, Robert Mans, Jack T Pronk, John P Morrissey, Jean-Marc G Daran |
Abstract |
While CRISPR-Cas9-mediated genome editing has transformed yeast research, current plasmids and cassettes for Cas9 and guide-RNA expression are species specific. CRISPR tools that function in multiple yeast species could contribute to the intensifying research on non-conventional yeasts. A plasmid carrying a pangenomic origin of replication and two constitutive expression cassettes, for Cas9 and a ribozyme-flanked gRNAs was constructed. Its functionality was tested by analyzing inactivation of the ADE2 gene in four yeast species. In two Kluyveromyces species, near-perfect targeting ( ≥ 96%) and homologous repair (HR) was observed in at least 24% of transformants. In two Ogataea species, Ade- mutants were not observed directly after transformation, but prolonged incubation of transformed cells resulted in targeting efficiencies of 9 to 63% mediated by non-homologous end joining (NHEJ). In a O. parapolymorpha KU80 mutant, deletion of OpADE2 mediated by HR was achieved, albeit at low efficiencies ( < 1%). Furthermore the expression of a dual polycistronic gRNA-array enabled simultaneous interruption of OpADE2 and OpYNR1 demonstrating flexibility of ribozyme-flanked gRNA design for multiplexing. While prevalence of NHEJ prevented HR-mediated editing in Ogataea, such targeted editing was possible in Kluyveromyces. This broad-host-range CRISPR/gRNA system may contribute to exploration of Cas9-mediated genome editing in other Saccharomycotina yeasts. |
X Demographics
Geographical breakdown
Country | Count | As % |
---|---|---|
Netherlands | 2 | 11% |
United Kingdom | 1 | 5% |
Italy | 1 | 5% |
United States | 1 | 5% |
Ireland | 1 | 5% |
Canada | 1 | 5% |
France | 1 | 5% |
Venezuela, Bolivarian Republic of | 1 | 5% |
Spain | 1 | 5% |
Other | 2 | 11% |
Unknown | 7 | 37% |
Demographic breakdown
Type | Count | As % |
---|---|---|
Members of the public | 11 | 58% |
Scientists | 8 | 42% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
Unknown | 169 | 100% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Student > Ph. D. Student | 27 | 16% |
Researcher | 24 | 14% |
Student > Master | 24 | 14% |
Student > Bachelor | 14 | 8% |
Student > Doctoral Student | 7 | 4% |
Other | 20 | 12% |
Unknown | 53 | 31% |
Readers by discipline | Count | As % |
---|---|---|
Biochemistry, Genetics and Molecular Biology | 72 | 43% |
Agricultural and Biological Sciences | 18 | 11% |
Immunology and Microbiology | 7 | 4% |
Engineering | 7 | 4% |
Chemical Engineering | 4 | 2% |
Other | 7 | 4% |
Unknown | 54 | 32% |