| Title |
UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction
|
|---|---|
| Published in |
Journal of Microbiology, February 2018
|
| DOI | 10.1007/s12275-018-8014-6 |
| Pubmed ID | |
| Authors |
Seong-In Na, Yeong Ouk Kim, Seok-Hwan Yoon, Sung-min Ha, Inwoo Baek, Jongsik Chun |
| Abstract |
Genome-based phylogeny plays a central role in the future taxonomy and phylogenetics of Bacteria and Archaea by replacing 16S rRNA gene phylogeny. The concatenated core gene alignments are frequently used for such a purpose. The bacterial core genes are defined as single-copy, homologous genes that are present in most of the known bacterial species. There have been several studies describing such a gene set, but the number of species considered was rather small. Here we present the up-to-date bacterial core gene set, named UBCG, and software suites to accommodate necessary steps to generate and evaluate phylogenetic trees. The method was successfully used to infer phylogenomic relationship of Escherichia and related taxa and can be used for the set of genomes at any taxonomic ranks of Bacteria. The UBCG pipeline and file viewer are freely available at https://www.ezbiocloud.net/ tools/ubcg and https://www.ezbiocloud.net/tools/ubcg_viewer, respectively. |
X Demographics
The data shown below were collected from the profiles of 3 X users who shared this research output. Click here to find out more about how the information was compiled.
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| Unknown | 3 | 100% |
Demographic breakdown
| Type | Count | As % |
|---|---|---|
| Members of the public | 2 | 67% |
| Scientists | 1 | 33% |
Mendeley readers
The data shown below were compiled from readership statistics for 275 Mendeley readers of this research output. Click here to see the associated Mendeley record.
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| Unknown | 275 | 100% |
Demographic breakdown
| Readers by professional status | Count | As % |
|---|---|---|
| Student > Ph. D. Student | 49 | 18% |
| Researcher | 39 | 14% |
| Student > Master | 30 | 11% |
| Student > Bachelor | 27 | 10% |
| Student > Doctoral Student | 15 | 5% |
| Other | 30 | 11% |
| Unknown | 85 | 31% |
| Readers by discipline | Count | As % |
|---|---|---|
| Agricultural and Biological Sciences | 70 | 25% |
| Biochemistry, Genetics and Molecular Biology | 59 | 21% |
| Immunology and Microbiology | 22 | 8% |
| Environmental Science | 9 | 3% |
| Engineering | 4 | 1% |
| Other | 16 | 6% |
| Unknown | 95 | 35% |
Attention Score in Context
This research output has an Altmetric Attention Score of 5. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 31 March 2022.
All research outputs
#6,792,953
of 25,002,811 outputs
Outputs from Journal of Microbiology
#131
of 859 outputs
Outputs of similar age
#110,062
of 335,891 outputs
Outputs of similar age from Journal of Microbiology
#8
of 16 outputs
Altmetric has tracked 25,002,811 research outputs across all sources so far. This one has received more attention than most of these and is in the 72nd percentile.
So far Altmetric has tracked 859 research outputs from this source. They receive a mean Attention Score of 3.3. This one has done well, scoring higher than 84% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 335,891 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 67% of its contemporaries.
We're also able to compare this research output to 16 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 56% of its contemporaries.