DNA Computing

Table of Contents

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   Book Overview
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   Chapter 1 Computing by Observing Bio-systems: The Case of Sticker Systems
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   Chapter 2 DNA-Based Computation Times
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   Chapter 3 Computing Beyond the Turing Limit Using the H Systems
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   Chapter 4 Biomolecular Implementation of Computing Devices with Unbounded Memory
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   Chapter 5 Characterization of Non-crosshybridizing DNA Oligonucleotides Manufactured In Vitro
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   Chapter 6 Error Free Self-assembly Using Error Prone Tiles
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   Chapter 7 On the Computational Complexity of P  Automata
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   Chapter 8 A Weighted Insertion-Deletion Stacked Pair Thermodynamic Metric for DNA Codes
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    Chapter 9 DNA Extraction by XPCR
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    Chapter 10 A Method of Error Suppression for Self-assembling DNA Tiles
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    Chapter 11 Using Automated Reasoning Systems on Molecular Computing
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    Chapter 12 Parallelism in Gene Assembly
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    Chapter 13 Splicing Systems for Universal Turing Machines
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    Chapter 14 Application of Mismatch Detection Methods in DNA Computing
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    Chapter 15 Bond-Free Languages: Formalizations, Maximality and Construction Methods
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    Chapter 16 Preventing Undesirable Bonds Between DNA Codewords
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    Chapter 17 Testing Structure Freeness of Regular Sets of Biomolecular Sequences
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    Chapter 18 Minimum Basin Algorithm: An Effective Analysis Technique for DNA Energy Landscapes
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    Chapter 19 Efficient Initial Pool Generation for Weighted Graph Problems Using Parallel Overlap Assembly
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    Chapter 20 Partial Words for DNA Coding
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    Chapter 21 Accepting Hybrid Networks of Evolutionary Processors
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    Chapter 22 Building the Components for a Biomolecular Computer
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    Chapter 23 Methods for Manipulating DNA Molecules in a Micrometer Scale Using Optical Techniques
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    Chapter 24 From Cells to Computers: Membrane Computing – A Quick Overview
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    Chapter 25 The Capacity of DNA for Information Encoding
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    Chapter 26 Compact Error-Resilient Computational DNA Tiling Assemblies
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    Chapter 27 Toward “Wet” Implementation of Genetic Algorithm for Protein Engineering
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    Chapter 28 Programmable Control of Nucleation for Algorithmic Self-assembly
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    Chapter 29 DNA Hybridization Catalysts and Catalyst Circuits
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    Chapter 30 Complexity of Self-assembled Shapes
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    Chapter 31 Aqueous Computing with DNA Hairpin-Based RAM
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    Chapter 32 A Programmable Molecular Computer in Microreactors
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    Chapter 33 Combinatorial Aspects of Minimal DNA Expressions
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    Chapter 34 A Design for Cellular Evolutionary Computation by Using Bacteria
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    Chapter 35 An Inexpensive LED-Based Fluorometer Used to Study a Hairpin-Based DNA Nanomachine
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    Chapter 36 Designs of Autonomous Unidirectional Walking DNA Devices
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    Chapter 37 Design of an Autonomous DNA Nanomechanical Device Capable of Universal Computation and Universal Translational Motion
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    Chapter 38 A Clocked DNA-Based Replicator
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    Chapter 39 A Bayesian Algorithm for In Vitro Molecular Evolution of Pattern Classifiers