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Computational Studies of RNA and DNA

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Cover of 'Computational Studies of RNA and DNA'

Table of Contents

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    Book Overview
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    Chapter 1 Basics of Nucleic Acid Structure
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    Chapter 2 Using Amber to Simulate DNA and RNA
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    Chapter 3 Theoretical Studies of Nucleic Acids and Nucleic Acid-Protein Complexes using Charmm
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    Chapter 4 Continuum Solvent Models to Study the Structure and Dynamics of Nucleic Acids and Complexes with Ligands
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    Chapter 5 Data Mining of Molecular Dynamic Trajectories of Nucleic Acids
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    Chapter 6 Enhanced Sampling Methods for Atomistic Simulation of Nucleic Acids
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    Chapter 7 Modeling DNA Deformation
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    Chapter 8 Molecular Dynamics Simulations and Free Energy Calculations on Protein-Nucleic Acid Complexes
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    Chapter 9 DNA Simulation Benchmarks as Revealed by X-Ray Structures
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    Chapter 10 RNA: The Cousin Left Behind Becomes a Star
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    Chapter 11 Molecular Dynamics Simulations of RNA Systems: Importance of the Initial Conditions
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    Chapter 12 Molecular Dynamics Simulations of Nucleic Acids
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    Chapter 13 Using Computer Simulations to Study Decoding by the Ribosome
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    Chapter 14 Base Stacking and Base Pairing
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    Chapter 15 Interaction of Metal Cations with Nucleic Acids and their Building Units
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    Chapter 16 Proton Transfer in DNA Base Pairs
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    Chapter 17 Comparative Study of Quantum Mechanical Methods Related to Nucleic Acid Bases: Electronic Spectra, Excited State Structures and Interations
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    Chapter 18 Substituent Effects on Hydrogen Bonds in DNA
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    Chapter 19 Computational modeling of Charge Transfer in DNA
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    Chapter 20 Quantum Chemical Calculations of NMR Parameters
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    Chapter 21 The Importance of Entropic Factors in DNA Behaviour: Insights from Simulations
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    Chapter 22 Sequence-Dependent Harmonic Deformability of Nucleic Acids Inferred from Atomistic Molecular Dynamics
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    Chapter 23 Simulation of Equilibrium and Dynamic Properties of Large DNA Molecules
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    Chapter 24 Chromatin Simulations
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Title
Computational Studies of RNA and DNA
Published by
Springer Netherlands, October 2006
DOI 10.1007/978-1-4020-4851-3
ISBNs
978-1-4020-4794-7, 978-1-4020-4851-7
Editors

Šponer, J., Lankaš, F.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 71 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Germany 2 3%
United Kingdom 2 3%
Czechia 1 1%
South Africa 1 1%
Mexico 1 1%
Korea, Republic of 1 1%
Unknown 63 89%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 25 35%
Researcher 13 18%
Professor 6 8%
Student > Bachelor 5 7%
Professor > Associate Professor 5 7%
Other 11 15%
Unknown 6 8%
Readers by discipline Count As %
Chemistry 30 42%
Agricultural and Biological Sciences 10 14%
Biochemistry, Genetics and Molecular Biology 9 13%
Physics and Astronomy 7 10%
Medicine and Dentistry 2 3%
Other 6 8%
Unknown 7 10%