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Research in Computational Molecular Biology

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Cover of 'Research in Computational Molecular Biology'

Table of Contents

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    Book Overview
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    Chapter 1 Integrated Protein Interaction Networks for 11 Microbes
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    Chapter 2 Hypergraph Model of Multi-residue Interactions in Proteins: Sequentially–Constrained Partitioning Algorithms for Optimization of Site-Directed Protein Recombination
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    Chapter 3 Biological Networks: Comparison, Conservation, and Evolutionary Trees
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    Chapter 4 Assessing Significance of Connectivity and Conservation in Protein Interaction Networks
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    Chapter 5 Clustering Short Gene Expression Profiles
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    Chapter 6 A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies
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    Chapter 7 Global Interaction Networks Probed by Mass Spectrometry
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    Chapter 8 Statistical Evaluation of Genome Rearrangement
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    Chapter 9 An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets
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    Chapter 10 Protein Function Annotation Based on Ortholog Clusters Extracted from Incomplete Genomes Using Combinatorial Optimization
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    Chapter 11 Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data
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    Chapter 12 RNA Secondary Structure Prediction Via Energy Density Minimization
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    Chapter 13 Structural Alignment of Pseudoknotted RNA
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    Chapter 14 Stan Ulam and Computational Biology
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    Chapter 15 CONTRAlign: Discriminative Training for Protein Sequence Alignment
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    Chapter 16 Clustering Near-Identical Sequences for Fast Homology Search
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    Chapter 17 New Methods for Detecting Lineage-Specific Selection
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    Chapter 18 A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer
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    Chapter 19 A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds Metric
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    Chapter 20 Algorithms to Distinguish the Role of Gene-Conversion from Single-Crossover Recombination in the Derivation of SNP Sequences in Populations
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    Chapter 21 Inferring Common Origins from mtDNA
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    Chapter 22 Efficient Enumeration of Phylogenetically Informative Substrings
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    Chapter 23 Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
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    Chapter 24 Maximal Accurate Forests from Distance Matrices
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    Chapter 25 Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction
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    Chapter 26 Improving Prediction of Zinc Binding Sites by Modeling the Linkage Between Residues Close in Sequence
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    Chapter 27 An Important Connection Between Network Motifs and Parsimony Models
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    Chapter 28 Ultraconserved Elements, Living Fossil Transposons, and Rapid Bursts of Change: Reconstructing the Uneven Evolutionary History of the Human Genome
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    Chapter 29 Permutation Filtering: A Novel Concept for Significance Analysis of Large-Scale Genomic Data
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    Chapter 30 Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes
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    Chapter 31 A New Approach to Protein Identification
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    Chapter 32 Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics
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    Chapter 33 Simulating Protein Motions with Rigidity Analysis
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    Chapter 34 Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation
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    Chapter 35 An Outsider’s View of the Genome
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    Chapter 36 Alignment Statistics for Long-Range Correlated Genomic Sequences
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    Chapter 37 Simple and Fast Inverse Alignment
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    Chapter 38 Revealing the Proteome Complexity by Mass Spectrometry
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    Chapter 39 Motif Yggdrasil: Sampling from a Tree Mixture Model
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    Chapter 40 A Study of Accessible Motifs and RNA Folding Complexity
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    Chapter 41 A Parameterized Algorithm for Protein Structure Alignment
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    Chapter 42 Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction
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    Chapter 43 A Branch-and-Reduce Algorithm for the Contact Map Overlap Problem
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    Chapter 44 Research in Computational Molecular Biology
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    Chapter 45 10 Years of the International Conference on Research in Computational Molecular Biology (RECOMB)
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    Chapter 46 Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions
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    Chapter 47 A Parsimony Approach to Genome-Wide Ortholog Assignment
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    Chapter 48 Detecting the Dependent Evolution of Biosequences
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    Chapter 49 Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data
Overall attention for this book and its chapters
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Mentioned by

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1 Wikipedia page

Citations

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Readers on

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379 Mendeley
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Title
Research in Computational Molecular Biology
Published by
Springer Berlin Heidelberg, August 2006
DOI 10.1007/11732990
ISBNs
978-3-54-033295-4, 978-3-54-033296-1
Editors

Apostolico, Alberto, Guerra, Concettina, Istrail, Sorin, Pevzner, Pavel A., Waterman, Michael

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 379 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 20 5%
Germany 3 <1%
Brazil 3 <1%
France 2 <1%
Norway 2 <1%
Netherlands 2 <1%
United Kingdom 2 <1%
India 2 <1%
Chile 1 <1%
Other 13 3%
Unknown 329 87%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 121 32%
Researcher 80 21%
Student > Master 45 12%
Student > Bachelor 31 8%
Student > Postgraduate 17 4%
Other 53 14%
Unknown 32 8%
Readers by discipline Count As %
Agricultural and Biological Sciences 150 40%
Computer Science 83 22%
Biochemistry, Genetics and Molecular Biology 48 13%
Mathematics 13 3%
Engineering 13 3%
Other 34 9%
Unknown 38 10%