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Algorithms in Bioinformatics

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Cover of 'Algorithms in Bioinformatics'

Table of Contents

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    Book Overview
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    Chapter 1 Automated Segmentation of DNA Sequences with Complex Evolutionary Histories
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    Chapter 2 Towards a Practical O(n logn) Phylogeny Algorithm
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    Chapter 3 A Mathematical Programming Approach to Marker-Assisted Gene Pyramiding
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    Chapter 4 Localized Genome Assembly from Reads to Scaffolds: Practical Traversal of the Paired String Graph
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    Chapter 5 Stochastic Errors vs. Modeling Errors in Distance Based Phylogenetic Reconstructions
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    Chapter 6 Constructing Large Conservative Supertrees
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    Chapter 7 PepCrawler: A Fast RRT–Like Algorithm for High–Resolution Refinement and Binding–Affinity Estimation of Peptide Inhibitors
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    Chapter 8 Removing Noise from Gene Trees
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    Chapter 9 Boosting Binding Sites Prediction Using Gene’s Positions
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    Chapter 10 Constructing Perfect Phylogenies and Proper Triangulations for Three-State Characters
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    Chapter 11 On a Conjecture about Compatibility of Multi-states Characters
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    Chapter 12 Learning Protein Functions from Bi-relational Graph of Proteins and Function Annotations
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    Chapter 13 Graph-Based Decomposition of Biochemical Reaction Networks into Monotone Subsystems
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    Chapter 14 Seed-Set Construction by Equi-entropy Partitioning for Efficient and Sensitive Short-Read Mapping
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    Chapter 15 A Practical Algorithm for Ancestral Rearrangement Reconstruction
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    Chapter 16 Bootstrapping Phylogenies Inferred from Rearrangement Data
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    Chapter 17 Speeding Up Bayesian HMM by the Four Russians Method
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    Chapter 18 Using Dominances for Solving the Protein Family Identification Problem
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    Chapter 19 Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data
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    Chapter 20 Algorithm for Identification of Piecewise Smooth Hybrid Systems: Application to Eukaryotic Cell Cycle Regulation
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    Chapter 21 Parsimonious Reconstruction of Network Evolution
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    Chapter 22 A Combinatorial Framework for Designing (Pseudoknotted) RNA Algorithms
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    Chapter 23 Indexing Finite Language Representation of Population Genotypes
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    Chapter 24 Efficiently Solvable Perfect Phylogeny Problems on Binary and k -State Data with Missing Values
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    Chapter 25 Separating Metagenomic Short Reads into Genomes via Clustering
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    Chapter 26 Finding Driver Pathways in Cancer: Models and Algorithms
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    Chapter 27 Clustering with Overlap for Genetic Interaction Networks via Local Search Optimization
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    Chapter 28 Dynamic Programming Algorithms for Efficiently Computing Cosegmentations between Biological Images
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    Chapter 29 GASTS: Parsimony Scoring under Rearrangements
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    Chapter 30 OMG! Orthologs in Multiple Genomes – Competing Graph-Theoretical Formulations
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Title
Algorithms in Bioinformatics
Published by
Springer Berlin Heidelberg, August 2011
DOI 10.1007/978-3-642-23038-7
ISBNs
978-3-64-223037-0, 978-3-64-223038-7
Editors

Przytycka, Teresa M., Sagot, Marie-France, Przytycka, Teresa M., Sagot, Marie-France

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X Demographics

The data shown below were collected from the profiles of 8 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 6 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Iran, Islamic Republic of 1 17%
Unknown 5 83%

Demographic breakdown

Readers by professional status Count As %
Professor > Associate Professor 2 33%
Lecturer 1 17%
Lecturer > Senior Lecturer 1 17%
Researcher 1 17%
Student > Ph. D. Student 1 17%
Other 0 0%
Readers by discipline Count As %
Mathematics 5 83%
Computer Science 1 17%