Trinucleotide repeat (TNR) expansions are the underlying cause of more than forty neurodegenerative and neuromuscular diseases, including myotonic dystrophy and Huntington's disease, yet the pathway to expansion remains poorly understood. An important step in expansion is the shift from a stable TNR sequence to an unstable, expanding tract, which is thought to occur once a TNR attains a threshold-length. Modeling of human data has indicated that TNR tracts are increasingly likely to expand as they increase in size, and to do so in increments that are smaller than the repeat itself, but this has not been tested experimentally. Genetic work has implicated the mismatch repair factor MSH3 in promoting expansions. Using Saccharomyces cerevisiae as a model for CAG and CTG tract dynamics, we examined individual threshold-length TNR tracts in vivo over time, in MSH3 and msh3Δ backgrounds. We demonstrated, for the first time, that these TNR tracts are highly dynamic. Furthermore, we established that once such a tract has expanded by even a few repeat units, it is significantly more likely to expand again. Finally, we show that threshold-length TNR sequences readily accumulate net incremental expansions over time, through a series of small expansion and contraction events. Importantly, the tracts were substantially stabilized in the msh3Δ background, with a bias toward contractions, indicating that Msh2-Msh3 plays an important role in shifting the expansion-contraction equilibrium towards expansion in the early stages of TNR tract expansion.