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Handbook of Hydrocarbon and Lipid Microbiology

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Cover of 'Handbook of Hydrocarbon and Lipid Microbiology'

Table of Contents

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    Book Overview
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    Chapter 1 Hydrocarbons: An Introduction to Structure, Physico-Chemical Properties and Natural Occurrence
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    Chapter 2 Methods of Hydrocarbon Analysis
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    Chapter 3 Natural Gas Hydrates
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    Chapter 4 Biosynthetic Oils, Fats, Terpenes, Sterols, Waxes: Analytical Methods, Diversity, Characteristics
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    Chapter 5 Stable Isotopes in Understanding Origin and Degradation Processes of Petroleum
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    Chapter 6 The Microbial Production of Methane and Other Volatile Hydrocarbons
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    Chapter 7 Isoprene, Isoprenoids and Sterols
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    Chapter 8 Hopanoids
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    Chapter 9 Pathways of Carbon Assimilation and Their Impact on Organic Matter Values δ13C
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    Chapter 10 Global Relations Between the Redox Cycles of Carbon, Iron, and Sulfur
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    Chapter 11 History of Life from the Hydrocarbon Fossil Record
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    Chapter 12 Marine Cold Seeps
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    Chapter 13 Mud Volcanoes
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    Chapter 14 Abiogenic Hydrocarbon Production at the Geosphere-Biosphere Interface via Serpentinization Reactions
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    Chapter 15 Coking Processes and Manufactured Gas Plants and Their Environmental Impact on Soil and Groundwater
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    Chapter 16 Shipping-Related Accidental and Deliberate Release into the Environment
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    Chapter 17 Oil Tanker Sludges and Slops
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    Chapter 18 Chemistry of Volatile Organic Compounds in the Atmosphere
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    Chapter 19 Hydrocarbons in the Pedosphere
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    Chapter 20 Organic Matter in the Hydrosphere
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    Chapter 21 Introduction to Microbial Hydrocarbon Production: Bioenergetics
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    Chapter 22 Methanogenesis: Syntrophic Metabolism
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    Chapter 23 Biochemistry of Acetotrophic Methanogenesis
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    Chapter 24 Aliphatic Hydrocarbons, Carbon–Carbon Bond Formation
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    Chapter 25 Halogenated Organic Compounds – Carbon-Halogen Bond Formation
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    Chapter 26 Formation of Fatty Acids
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    Chapter 27 Formation of Bacterial Membrane Lipids: Pathways, Enzymes, Reactions
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    Chapter 28 Lipid A
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    Chapter 29 Membrane Biogenesis
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    Chapter 30 Membrane Disrupting Proteins
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    Chapter 31 Lipid Intermediates in Bacterial Peptidoglycan Biosynthesis
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    Chapter 32 Phenolic Lipids Synthesized by Type III Polyketide Synthases
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    Chapter 33 The Biosynthesis and Evolution of Archaeal Membranes and Ether Phospholipids
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    Chapter 34 Production of Wax Esters by Bacteria
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    Chapter 35 Neutral Lipids in Yeast: Synthesis, Storage and Degradation
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    Chapter 36 Methanogenesis
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    Chapter 37 Functional Genomics of Methanogens
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    Chapter 38 Regulation of Membrane Lipid Homeostasis in Bacteria
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    Chapter 39 Type III Polyketide Synthases Responsible for Phenolic Lipid Synthesis
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    Chapter 40 Genetics of Wax Ester and Triacylglycerol Biosynthesis in Bacteria
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    Chapter 41 Players in the Neutral Lipid Game – Proteins Involved in Neutral Lipid Metabolism in Yeast
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    Chapter 42 Taxonomy of Methanogens
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    Chapter 43 Methanobacteriales
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    Chapter 44 Methanococcales
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    Chapter 45 Methanomicrobiales
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    Chapter 46 Methanosarcinales
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    Chapter 47 Methanopyrales
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    Chapter 48 Aliphatic Hydrocarbon Producers
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    Chapter 49 Introduction
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    Chapter 50 Soil, Wetlands, Peat
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    Chapter 51 Environmental Constraints that Limit Methanogenesis
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    Chapter 52 Methanogenesis in Arctic Permafrost Habitats
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    Chapter 53 Methanogens and Methanogenesis in Hypersaline Environments
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    Chapter 54 Thermophilic Methanoarchaea Inhabiting Hot Ecosystems
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    Chapter 55 Mammalian Digestive Tract
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    Chapter 56 Methanogenesis in the Digestive Tracts of Insects
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    Chapter 57 Energetic and Other Quantitative Aspects of Microbial Hydrocarbon Utilization
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    Chapter 58 Physiology and Biochemistry of the Aerobic Methane Oxidizing Bacteria
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    Chapter 59 Enzymes for Aerobic Degradation of Alkanes
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    Chapter 60 Aerobic Degradation of Aromatic Hydrocarbons
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    Chapter 61 Aerobic Degradation of Chloroaromatics
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    Chapter 62 Aerobic Degradation of Halogenated Aliphatics
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    Chapter 63 The Biochemistry of Anaerobic Methane Oxidation
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    Chapter 64 Biochemistry of the Anaerobic Degradation of Non-Methane Alkanes
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    Chapter 65 Anaerobic Degradation of Aromatic Hydrocarbons
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    Chapter 66 Microbial Degradation of Aliphatic and Aromatic Hydrocarbons with (Per)Chlorate as Electron Acceptor
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    Chapter 67 Hydrocarbon Degradation Coupled to Metal Reduction
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    Chapter 68 Anaerobic Degradation of Isoprene-Derived Compounds
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    Chapter 69 Degradation of Long-Chain Fatty Acids by Sulfate-Reducing and Methanogenic Communities
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    Chapter 70 Diversity and Common Principles in Enzymatic Activation of Hydrocarbons
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    Chapter 71 Anaerobic Degradation of Hydrocarbons: Mechanisms of C–H-Bond Activation in the Absence of Oxygen
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    Chapter 72 The Role of Metals
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    Chapter 73 Biochemistry and Molecular Biology of Methane Monooxygenase
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    Chapter 74 Aerobic Degradation of Aromatic Hydrocarbons: Enzyme Structures and Catalytic Mechanisms
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    Chapter 75 Oxidative Inactivation of Ring-Cleavage Extradiol Dioxygenases: Mechanism and Ferredoxin-Mediated Reactivation
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    Chapter 76 Structure–Function Relationships and Engineering of Haloalkane Dehalogenases
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    Chapter 77 Lipolytic Enzymes from Bacteria
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    Chapter 78 Transcriptional Control of the TOL Plasmid Pathways
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    Chapter 79 Genetic Features and Regulation of n-Alkane Metabolism
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    Chapter 80 Diversity of Naphthalene Biodegradation Systems in Soil Bacteria
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    Chapter 81 Genomic View of Mycobacterial High Molecular Weight Polycyclic Aromatic Hydrocarbon Degradation
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    Chapter 82 Genetics of Biphenyl Biodegradation and Co-Metabolism of PCBs
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    Chapter 83 Genetics and Molecular Features of Bacterial Dimethylsulfoniopropionate (DMSP) and Dimethylsulfide (DMS) Transformations
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    Chapter 84 Environmental Mining of Biological Activities on Hydrocarbons
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    Chapter 85 Evolution of New Catabolic Functions Through Gene Assembly by Mobile Genetic Elements
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    Chapter 86 Experimental Evolution of Novel Regulatory Activities in Response to Hydrocarbons and Related Chemicals
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    Chapter 87 Rational Construction of Bacterial Strains with New/Improved Catabolic Capabilities for the Efficient Breakdown of Environmental Pollutants
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    Chapter 88 Bioinformatic, Molecular and Genetic Tools for Exploring Genome-wide Responses to Hydrocarbons
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    Chapter 89 Alcanivorax borkumensis
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    Chapter 90 Marinobacter
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    Chapter 91 A Genomic View of the Catabolism of Aromatic Compounds in Pseudomonas
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    Chapter 92 Genomics of Methylococcus capsulatus
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    Chapter 93 Roseobacter
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    Chapter 94 Rhodococcus: Genetics and Functional Genomics
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    Chapter 95 Phylogenomics of Aerobic Bacterial Degradation of Aromatics
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    Chapter 96 Transcriptional Networks that Regulate Hydrocarbon Biodegradation
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    Chapter 97 Emerging Systems and Synthetic Biology Approaches to Hydrocarbon Biotechnology
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    Chapter 98 Introduction: Problems of Hydrophobicity/Bioavailability
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    Chapter 99 Water-Hydrophobic Compound Interactions with the Microbial Cell
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    Chapter 100 Matrix-Hydrophobic Compound Interactions
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    Chapter 101 Microorganism-Hydrophobic Compound Interactions
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    Chapter 102 Biofilm Development at Interfaces between Hydrophobic Organic Compounds and Water
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    Chapter 103 Production and Roles of Biosurfactants and Bioemulsifiers in Accessing Hydrophobic Substrates
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    Chapter 104 Uptake and Assimilation of Hydrophobic Substrates by the Oleaginous Yeast Yarrowia lipolytica
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    Chapter 105 Chemotaxis
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    Chapter 106 Substrate Transport
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    Chapter 107 Fungi as Transport Vectors for Contaminants and Contaminant-Degrading Bacteria
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    Chapter 108 Toxicity of Hydrocarbons to Microorganisms
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    Chapter 109 Genetics of Accessing and Exploiting Hydrocarbons
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    Chapter 110 Extrusion Pumps for Hydrocarbons: An Efficient Evolutionary Strategy to Confer Resistance to Hydrocarbons
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    Chapter 111 Membrane Composition and Modifications in Response to Aromatic Hydrocarbons in Gram Negative Bacteria
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    Chapter 112 Cis–Trans Isomerase of Unsaturated Fatty Acids: An Immediate Bacterial Adaptive Mechanism to Cope with Emerging Membrane Perturbation Caused by Toxic Hydrocarbons
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    Chapter 113 Surface Properties and Cellular Energetics of Bacteria in Response to the Presence of Hydrocarbons
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    Chapter 114 Microbiology of Oil Fly Larvae
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    Chapter 115 Kinetics and Physiology at Vanishingly Small Substrate Concentrations
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    Chapter 116 Feast: Choking on Acetyl-CoA, the Glyoxylate Shunt, and Acetyl-CoA-Driven Metabolism
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    Chapter 117 Nitrogen Fixation and Hydrocarbon-Oxidizing Bacteria
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    Chapter 118 Prokaryotic Hydrocarbon Degraders
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    Chapter 119 Hydrocarbon-Degrading Sphingomonads: Sphingomonas, Sphingobium, Novosphingobium, and Sphingopyxis
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    Chapter 120 Marine, Hydrocarbon-Degrading Alphaproteobacteria
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    Chapter 121 Hydrocarbon Degradation by Betaproteobacteria
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    Chapter 122 Marinobacter
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    Chapter 123 Alcanivorax
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    Chapter 124 Oleiophilus
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    Chapter 125 Oleispira
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    Chapter 126 Thalassolituus
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    Chapter 127 Neptunomonas
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    Chapter 128 Cycloclasticus: A Genus of Marine Polycyclic Aromatic Hydrocarbon Degrading Bacteria
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    Chapter 129 Microbiology of Hydrocarbon-Degrading Pseudomonas
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    Chapter 130 Acinetobacter and Alkanindiges
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    Chapter 131 Xanthomonads
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    Chapter 132 Bacteroidetes
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    Chapter 133 Actinobacteria
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    Chapter 134 Rhodococcus
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    Chapter 135 Micrococcineae: Arthrobacter and Relatives
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    Chapter 136 Degradation of Polycyclic Aromatic Hydrocarbons by Mycobacterium Strains
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    Chapter 137 Thermoleophilum: A Gram-Positive Hydrocarbonoclastic Thermophilic Bacterium
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    Chapter 138 The Genus Geobacillus and Hydrocarbon Utilization
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    Chapter 139 Psychrophiles - Cold-Adapted Hydrocarbon-Degrading Microorganisms
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    Chapter 140 Hydrocarbon-Degradation by Acidophilic Microorganisms
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    Chapter 141 Alkaliphilic Hydrocarbon Degraders
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    Chapter 142 Halophilic Hydrocarbon Degraders
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    Chapter 143 The Aerobic Methane Oxidizing Bacteria (Methanotrophs)
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    Chapter 144 Facultative Methane Oxidizers
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    Chapter 145 Symbiotic Methane Oxidizers
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    Chapter 146 Anaerobic Hydrocarbon-Degrading Microorganisms: An Overview
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    Chapter 147 Anaerobic Methane Oxidizers
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    Chapter 148 Nitrate, Perchlorate and Metal Respirers
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    Chapter 149 Anaerobic Utilization of Halohydrocarbons
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    Chapter 150 Eukaryotic Hydrocarbon Degraders
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    Chapter 151 Degradation of Polycyclic Aromatic Hydrocarbons by Fungi
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    Chapter 152 The Hydrocarbon-Degrading Oleaginous Yeast Yarrowia lipolytica
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    Chapter 153 Introduction to Microorganisms Utilizing Nitrogen and Sulfur Containing Heterocyclic Hydrocarbons
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    Chapter 154 Microorganisms Utilizing Sulfur-Containing Hydrocarbons
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    Chapter 155 Microorganisms Utilizing Nitrogen-Containing Heterocyclic Hydrocarbons
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    Chapter 156 Microbial Communities in Oil Shales, Biodegraded and Heavy Oil Reservoirs, and Bitumen Deposits
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    Chapter 157 Permafrost – Current and Future Challenges to Study Methanotrophy in Permafrost Affected Tundra and Wetlands
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    Chapter 158 Acidic Environments
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    Chapter 159 Habitats of Anaerobic Methane Oxidizers
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    Chapter 160 Sulfate-Reducing and Methanogenic Hydrocarbon-Oxidizing Microbial Communities in the Marine Environment
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    Chapter 161 Fungal Communities of Methane Clathrate-Bearing Deep Sea Sediments
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    Chapter 162 The Meta-Methanoxgenome
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    Chapter 163 Lipid Metabolism and the Rumen Microbial Ecosystem
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    Chapter 164 The Oil Reservoir Ecosystem
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    Chapter 165 Biodiesel
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    Chapter 166 Coal, Coal Mines and Spoil Heaps
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    Chapter 167 Microbial Hydrocarbon Degradation at Coal Gasification Plants
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    Chapter 168 Microbial Communities in Hydrocarbon-Contaminated Temperate, Tropical, Alpine, and Polar Soils
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    Chapter 169 Bacterial Diversity in Hydrocarbon-Polluted Rivers, Estuaries and Sediments
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    Chapter 170 Impact of Pollution on Microbial Mats
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    Chapter 171 Bacterial Communities in Hydrocarbon-Contaminated Marine Coastal Environments
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    Chapter 172 Harbors and Marinas
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    Chapter 173 The Microbiology of Metal Working Fluids
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    Chapter 174 Milk Fat/Rancidity
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    Chapter 175 Vegetable Oil Wastes
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    Chapter 176 Foam in Wastewater Treatment Facilities
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    Chapter 177 Functional Gene Diversity, Biogeography, Dynamics
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    Chapter 178 Role of Protists in Microbial Interactions with Hydrocarbons
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    Chapter 179 Exploiting Microbial Diversity: The Challenges and the Means
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    Chapter 180 Bioremediation/Biomitigation: Introduction
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    Chapter 181 Reactive Tracers to Characterize Pollutant Distribution and Behavior in Aquifers
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    Chapter 182 Natural Attenuation of Hydrocarbon Compounds in Groundwater
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    Chapter 183 Weathered Hydrocarbon Biotransformation: Implications for Bioremediation, Analysis, and Risk Assessment
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    Chapter 184 Role of Fertilizers: Biostimulation
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    Chapter 185 Cometabolic Bioremediation
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    Chapter 186 Role of Biosurfactants
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    Chapter 187 Biostimulation Strategies for Enhanced Bioremediation of Marine Oil Spills Including Chronic Pollution
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    Chapter 188 Bioaugmentation of Hydrocarbons
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    Chapter 189 Plant-Microbe Partnerships
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    Chapter 190 Removal of Hydrocarbons and Other Related Chemicals via the Rhizosphere of Plants
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    Chapter 191 In Situ: Groundwater Bioremediation
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    Chapter 192 Remediation of Petrol and Diesel in Subsurface from Petrol Station Leaks
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    Chapter 193 Remediation of BTEX in Groundwater Underlying Petrochemical Plants
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    Chapter 194 Bioremediation of Marine Oil Spills
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    Chapter 195 Anaerobic Digesters for Digestion of Fat-Rich Materials
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    Chapter 196 The Industrial Consequences of Microbial Deterioration of Metal-Working Fluid
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    Chapter 197 Genetic Constructs: Molecular Tools for the Assembly of Environmental Bacterial Biosensors
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    Chapter 198 GeoChip: A High Throughput Genomic Tool for Linking Community Structure to Functions
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    Chapter 199 Q-RT-PCR Detection of Substrate-Specific Gene Expression
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    Chapter 200 Antibody Microarrays for Environmental Monitoring
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    Chapter 201 Using Microorganisms as Prospecting Agents in Oil and Gas Exploration
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    Chapter 202 3° Oil Recovery: Fundamental Approaches and Principles of Microbially Enhanced Oil Recovery
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    Chapter 203 3° Oil Recovery: Experiences and Economics of Microbially Enhanced Oil Recovery (MEOR)
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    Chapter 204 Microbial Ecology of Oil Reservoir Souring and its Control by Nitrate Injection
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    Chapter 205 Application of Microorganisms to the Processing and Upgrading of Crude Oil and Fractions
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    Chapter 206 Genetics Engineering for Removal of Sulfur and Nitrogen from Fuel Heterocycles
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    Chapter 207 Biofuels (Butanol-Ethanol Production)
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    Chapter 208 Biomethane as an Energy Source
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    Chapter 209 Hydrocarbons from Algae
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    Chapter 210 Biodiesel from Microalgae
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    Chapter 211 Enzymatic Functionalization of Hydrocarbon-like Molecules
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    Chapter 212 Screening for Enantioselective Enzymes
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    Chapter 213 Biopetrochemicals via Biocatalysis by Hydrocarbons Microbes and their Enzymes
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    Chapter 214 Chemical Feedstocks and Fine Chemicals from Other Substrates
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    Chapter 215 Chemical Production – Biohalogenation
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    Chapter 216 Metagenomic Mining of Enzyme Diversity
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    Chapter 217 Evolving Enzymes for Biocatalysis
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    Chapter 218 Synthetic Biology for Biocatalysis
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    Chapter 219 Microbial Production of Isoprenoids
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    Chapter 220 Rediscovering Biopolymers
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    Chapter 221 Polyhydroxyalkanoates Produced by Hydrocarbon-Degrading Bacteria
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    Chapter 222 Biotechnological Production and Significance of Triacylglycerols and Wax Esters
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    Chapter 223 Yarrowia lipolytica as a Cell Factory for Oleochemical Biotechnology
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    Chapter 224 Ethylene Production by Fungi: Biological Questions and Future Developments Towards a Sustainable Polymers Industry
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    Chapter 225 Lipid-Containing Secondary Metabolites from Algae
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    Chapter 226 Protein Emulsifiers
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    Chapter 227 Rhamnolipids
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    Chapter 228 Global Scale Consequences of Biological Methane Production
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    Chapter 229 Ecology of Aerobic Methanotrophs and their Role in Methane Cycling
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    Chapter 230 Global Consequences of Anaerobic Methane Oxidation
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    Chapter 231 Global Consequences of the Microbial Production and Consumption of Inorganic and Organic Sulfur Compounds
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    Chapter 232 Hydrocarbon Degradation in Petroleum Reservoirs
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    Chapter 233 Gastrointestinal Tract: Fat Metabolism in the Colon
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    Chapter 235 Gastrointestinal Tract: Microbial Metabolism of Steroids
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    Chapter 236 Obesity, Bacteria and Fat
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    Chapter 238 Forage Lipids and Effects on Ruminant Productivity
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    Chapter 239 Oral Microbiology: Pathogens, Methanogens, Sulfate-Reducing and Methylotrophic Bacteria in Halitosis and Periodontitis
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    Chapter 240 Lipid Rafts and Pseudomonas aeruginosa Infections
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    Chapter 241 Mycobacterial Lipid Bodies and the Chemosensitivity and Transmission of Tuberculosis
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    Chapter 242 Lipids and Legionella Virulence
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    Chapter 243 Skin Microbiology, Body Odor, and Methylotrophic Bacteria
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    Chapter 244 Skin: Acne and Propionibacterium acnes Genomics
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    Chapter 245 Methylotrophic Bacteria in Trimethylaminuria and Bacterial Vaginosis
  245. Altmetric Badge
    Chapter 246 Lipases as Pathogenicity Factors of Bacterial Pathogens of Humans
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    Chapter 247 Lipases as Pathogenicity Factors of Fungi
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    Chapter 248 Lipases as Pathogenicity Factors of Plant Pathogens
  248. Altmetric Badge
    Chapter 249 Role of Cellular Control of Propionyl-CoA Levels for Microbial Pathogenesis
  249. Altmetric Badge
    Chapter 250 Oil Degraders as Pathogens
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    Chapter 251 Pathogens in Metal Working Fluids
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    Chapter 252 Infection Prevention: Oil- and Lipid-Containing Products in Vaccinology
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    Chapter 253 Biogas-Based Sustainable Bio-Economy
  253. Altmetric Badge
    Chapter 254 Methane Production in a More Saline World
  254. Altmetric Badge
    Chapter 255 Potential for Microbial Interventions to Reduce Global Warming
  255. Altmetric Badge
    Chapter 256 Can we Improve Bioremediation?
  256. Altmetric Badge
    Chapter 313 Handbook of Hydrocarbon and Lipid Microbiology
  257. Altmetric Badge
    Chapter 323 Denaturing Gradient Gel Electrophoresis (DGGE) for Microbial Community Analysis
Attention for Chapter 323: Denaturing Gradient Gel Electrophoresis (DGGE) for Microbial Community Analysis
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Chapter title
Denaturing Gradient Gel Electrophoresis (DGGE) for Microbial Community Analysis
Chapter number 323
Book title
Handbook of Hydrocarbon and Lipid Microbiology
Published by
Springer Berlin Heidelberg, November 2015
DOI 10.1007/978-3-540-77587-4_323
Book ISBNs
978-3-54-077584-3, 978-3-54-077587-4
Authors

S. J. Green, M. B. Leigh, J. D. Neufeld

Editors

Kenneth N. Timmis

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 214 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Brazil 3 1%
United States 3 1%
United Kingdom 2 <1%
Malaysia 1 <1%
Indonesia 1 <1%
Canada 1 <1%
Mexico 1 <1%
United Arab Emirates 1 <1%
Denmark 1 <1%
Other 3 1%
Unknown 197 92%

Demographic breakdown

Readers by professional status Count As %
Student > Master 48 22%
Researcher 42 20%
Student > Ph. D. Student 34 16%
Student > Bachelor 25 12%
Student > Doctoral Student 11 5%
Other 30 14%
Unknown 24 11%
Readers by discipline Count As %
Agricultural and Biological Sciences 94 44%
Biochemistry, Genetics and Molecular Biology 31 14%
Environmental Science 20 9%
Immunology and Microbiology 13 6%
Engineering 7 3%
Other 16 7%
Unknown 33 15%