Title |
Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets
|
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Published in |
Cell, January 2005
|
DOI | 10.1016/j.cell.2004.12.035 |
Pubmed ID | |
Authors |
Benjamin P. Lewis, Christopher B. Burge, David P. Bartel |
Abstract |
We predict regulatory targets of vertebrate microRNAs (miRNAs) by identifying mRNAs with conserved complementarity to the seed (nucleotides 2-7) of the miRNA. An overrepresentation of conserved adenosines flanking the seed complementary sites in mRNAs indicates that primary sequence determinants can supplement base pairing to specify miRNA target recognition. In a four-genome analysis of 3' UTRs, approximately 13,000 regulatory relationships were detected above the estimate of false-positive predictions, thereby implicating as miRNA targets more than 5300 human genes, which represented 30% of our gene set. Targeting was also detected in open reading frames. In sum, well over one third of human genes appear to be conserved miRNA targets. |
X Demographics
Geographical breakdown
Country | Count | As % |
---|---|---|
Unknown | 1 | 100% |
Demographic breakdown
Type | Count | As % |
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Members of the public | 1 | 100% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
United States | 45 | 1% |
United Kingdom | 27 | <1% |
Germany | 20 | <1% |
Brazil | 13 | <1% |
Spain | 12 | <1% |
Italy | 10 | <1% |
Japan | 8 | <1% |
Denmark | 6 | <1% |
China | 6 | <1% |
Other | 71 | 2% |
Unknown | 3522 | 94% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Student > Ph. D. Student | 954 | 26% |
Researcher | 655 | 18% |
Student > Master | 488 | 13% |
Student > Bachelor | 392 | 10% |
Student > Doctoral Student | 217 | 6% |
Other | 522 | 14% |
Unknown | 512 | 14% |
Readers by discipline | Count | As % |
---|---|---|
Agricultural and Biological Sciences | 1403 | 38% |
Biochemistry, Genetics and Molecular Biology | 862 | 23% |
Medicine and Dentistry | 339 | 9% |
Computer Science | 103 | 3% |
Neuroscience | 72 | 2% |
Other | 346 | 9% |
Unknown | 615 | 16% |