Bioinformatics Research and Development

Chapter 1 Bayesian Inference of Gene Regulatory Networks Using Gene Expression Time Series Data

Chapter 2 Biological Network Inference Using Redundancy Analysis

Chapter 3 A Novel Graph Optimisation Algorithm for the Extraction of Gene Regulatory Networks from Temporal Microarray Data

Chapter 4 Analysing Periodic Phenomena by Circular PCA

Chapter 5 Identification of Cold-Induced Genes in Cereal Crops and Arabidopsis Through Comparative Analysis of Multiple EST Sets

Chapter 6 Mining Spatial Gene Expression Data for Association Rules

Chapter 7 Individualized Predictions of Survival Time Distributions from Gene Expression Data Using a Bayesian MCMC Approach

Chapter 8 Comparing Logic Regression Based Methods for Identifying SNP Interactions

Chapter 9 Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell Nuclei

Chapter 10 Structural Screening of HIV-1 Protease/Inhibitor Docking by Non-parametric Binomial Distribution Test

Chapter 11 satDNA Analyzer 1.2 as a Valuable Computing Tool for Evolutionary Analysis of Satellite-DNA Families: Revisiting Y-Linked Satellite-DNA Sequences of Rumex (Polygonaceae)

Chapter 12 A Soft Hierarchical Algorithm for the Clustering of Multiple Bioactive Chemical Compounds

Chapter 13 A Novel Method for Flux Distribution Computation in Metabolic Networks

Chapter 14 Inverse Bifurcation Analysis of a Model for the Mammalian G 1 / S Regulatory Module

Chapter 15 Weighted Cohesiveness for Identification of Functional Modules and Their Interconnectivity

Chapter 16 Modelling and Simulation of the Genetic Phenomena of Additivity and Dominance via Gene Networks of Parallel Aggregation Processes

Chapter 17 Protein Remote Homology Detection Based on Binary Profiles

Chapter 18 Biological Sequences Encoding for Supervised Classification

Chapter 19 Fast Search Algorithms for Position Specific Scoring Matrices

Chapter 20 A Markovian Approach for the Segmentation of Chimpanzee Genome

Chapter 21 Synthetic Protein Sequence Oversampling Method for Classification and Remote Homology Detection in Imbalanced Protein Data

Chapter 22 Stem Kernels for RNA Sequence Analyses

Chapter 23 Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models

Chapter 24 Patch Prediction of Protein Interaction Sites: Validation of a Scoring Function for an Online Server

Chapter 25 Statistical Inference on Distinct RNA Stem-Loops in Genomic Sequences

Chapter 26 Interpretation of Protein Subcellular Location Patterns in 3D Images Across Cell Types and Resolutions

Chapter 27 Bayesian Inference for 2D Gel Electrophoresis Image Analysis

Chapter 28 SimShiftDB: Chemical-Shift-Based Homology Modeling

Chapter 29 Annotation of LC/ESI-MS Mass Signals

Chapter 30 Stochastic Protein Folding Simulation in the d-Dimensional HP-Model

Chapter 31 Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction

Chapter 32 Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem

Chapter 33 An Evaluation of Text Retrieval Methods for Similarity Search of Multi-dimensional NMR-Spectra

Chapter 34 Ontology-Based MEDLINE Document Classification

Chapter 35 Integrating Mutations Data of the TP53 Human Gene in the Bioinformatics Network Environment

Chapter 36 Efficient and Scalable Indexing Techniques for Biological Sequence Data