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Molecular Microbial Ecology of the Rhizosphere

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Cover of 'Molecular Microbial Ecology of the Rhizosphere'

Table of Contents

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    Book Overview
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    Chapter 1 Introduction
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    Chapter 2 Using Genomics to Unveil Bacterial Determinants of Rhizosphere Life Style
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    Chapter 3 Benefits of Breeding Crops for Yield Response to Soil Organisms
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    Chapter 4 Microbial Interactions in the Rhizosphere
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    Chapter 5 Culture‐Independent Molecular Approaches to Microbial Ecology in Soil and the Rhizosphere
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    Chapter 6 Exploiting New Systems‐Based Strategies to Elucidate Plant–Bacterial Interactions in the Rhizosphere
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    Chapter 7 Combining Molecular Microbial Ecology with Ecophysiology and Plant Genetics for a Better Understanding of Plant–Microbial Communities' Interactions in the Rhizosphere
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    Chapter 8 Microbially Mediated Plant Functional Traits
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    Chapter 9 Unraveling the Shed of Unexplored Rhizosphere Microbial Diversity
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    Chapter 10 Advanced Molecular Tools for Analysis of Bacterial Communities and Their Interactions in the Rhizosphere
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    Chapter 11 Challenges in Assessing Links Between Root Exudates and the Structure and Function of Soil Microbial Communities
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    Chapter 12 Root Secretions: Interrelating Genes and Molecules to Microbial Associations. Is it All that Simple?
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    Chapter 13 The Use of Stable Isotope Labeling and Compound‐Specific Analysis of Microbial Phospholipid Fatty Acids to Quantify the Influences of Rhizodeposition on Microbial Community Structure and Function
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    Chapter 14 Metarhizium Robertsii, A Rhizosphere‐Competent Insect Pathogen
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    Chapter 15 Shaping of Microbial Community Structure and Function in the Rhizosphere by Four Diverse Plant Species
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    Chapter 16 Exploration of Hitherto‐Uncultured Bacteria from the Rhizosphere
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    Chapter 17 The Use of Molecular Methods to Assess Chemotactic‐Competent Bacterial Populations in the Rhizosphere
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    Chapter 18 Assessment of Rice Root‐Associated Bacteria
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    Chapter 19 Phylogenetic Analysis of Azospirillum Species Isolated from the Rhizosphere of Field‐Grown Wheat Based on Genetic and Phenotypic Features
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    Chapter 20 Influence of Intercropping and Intercropping Plus Rhizobial Inoculation on Microbial Activity and Community Composition in Rhizosphere of Alfalfa (Medicago sativa L.) and Siberian Wildrye (Elymus sibiricus L.)
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    Chapter 21 Root Exudates and Soil: Crucial for Molecular Understanding of Interactions in the Rhizosphere
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    Chapter 22 Do Root Exudates Exert More Influence on Rhizosphere Bacterial Community Structure Than Other Rhizodeposits?
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    Chapter 23 Arabidopsis thaliana as Model for Studies on the Bacterial Root Microbiota
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    Chapter 24 Genetic and Developmental Control of Rhizosphere Bacterial Communities
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    Chapter 25 Arabidopsis thaliana: A Useful but Limited Model to Investigate Stress Impacts on Rhizosphere Community Composition and Function
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    Chapter 26 Medicago truncatula Root Proteomics
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    Chapter 27 Control of the Cooperation Between Plant Growth‐Promoting Rhizobacteria and Crops by Rhizosphere Signals
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    Chapter 28 Small Molecules Involved in Transkingdom Communication between Plants and Rhizobacteria
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    Chapter 29 Bacterial Biosynthesis of Indole‐3‐Acetic Acid: Signal Messenger Service
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    Chapter 30 Fixing and Non‐Fixing Rhizobia Affect Arabidopsis Root Architecture by Interfering with the Auxin Signaling Pathway
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    Chapter 31 Terpene Production by Bacteria and its Involvement in Plant Growth Promotion, Stress Alleviation, and Yield Increase
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    Chapter 32 Rapid Identification of Plant‐Growth‐Promoting Rhizobacteria Using an Agar Plate Cocultivation System with Arabidopsis
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    Chapter 33 Strigolactone Biosynthesis and Biology
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    Chapter 34 Chemistry of Strigolactones: Why and How do Plants Produce so Many Strigolactones?
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    Chapter 35 Strigolactones: Crucial Cues in the Rhizosphere
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    Chapter 36 Bacterial Endophytes: Who and Where, and What are they doing there?
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    Chapter 37 Properties of Bacterial Endophytes Leading to Maximized Host Fitness
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    Chapter 38 DNA‐Based Stable Isotope Probing for Identifying Active Bacterial Endophytes in Potato
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    Chapter 39 Visualization of Niches of Colonization of Firmicutes with Bacillus spp. in the Rhizosphere, Rhizoplane, and Endorhiza of Grapevine Plants at Flowering Stage of Development by FISH Microscopy
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    Chapter 40 The Poplar Endophyte Pseudomonas putida W619 as a Key to a Successful Phytoremediation of Volatile Organic Contaminants
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    Chapter 41 NifH Gene Expression and Nitrogen Fixation by Diazotrophic Endophytes in Sugarcane and Sweet Potatoes
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    Chapter 42 Surveying Diverse Zea Seed for Populations of Bacterial Endophytes
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    Chapter 43 Molecular Mechanisms Governing Arbuscular Mycorrhiza Development and Function
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    Chapter 44 Diversity and Evolution of Nitrogen‐Fixing Legume Symbionts
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    Chapter 45 Lipochitooligosaccharide Perception and the Basis of Partner Recognition in Root Endosymbioses
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    Chapter 46 Rhizobial Genetic Repertoire to Inhabit Legume and Nonlegume Rhizospheres
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    Chapter 47 Who is Controlling whom within the Ectomycorrhizal Symbiosis: Insights from Genomic and Functional Analyses
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    Chapter 48 Role of Carotenoid Metabolism in the Arbuscular Mycorrhizal Symbiosis
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    Chapter 49 Bacterial Colonization of the Arbuscular Mycorrhizal Fungal Hyphosphere
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    Chapter 50 Role of Quorum Sensing in the Sinorhizobium Meliloti–Alfalfa Symbiosis
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    Chapter 51 Roles of Flavonoids in Symbiotic Root–Rhizosphere Interactions
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    Chapter 52 Exopolysaccharides and Nodule Invasion in the Sinorhizobium Meliloti–Alfalfa Symbiosis
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    Chapter 53 Plant Growth Promotion by Microbes
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    Chapter 54 Microbial Control of Plant Root Diseases
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    Chapter 55 Biocontrol and Osmoprotection for Plants under Salinated Conditions
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    Chapter 56 Genetics and Evolution of 2, 4‐Diacetylphloroglucinol Synthesis in Pseudomonas Fluorescens
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    Chapter 57 Suppression of Crown Gall Disease by Rhizosphere Bacteria and Agrobacterium‐Specific Bacteriophages
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    Chapter 58 Molecular‐Based Strategies to Exploit the Inorganic Phosphate‐Solubilization Ability of Pseudomonas in Sustainable Agriculture
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    Chapter 59 The Biocontrol Bacterium Pseudomonas Fluorescens Pf29Arp Strain Affects the Pathogenesis‐Related Gene Expression of the Take‐All Fungus Gaeumannomyces Graminis Var. Tritici on Wheat Roots
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    Chapter 60 Marker‐Assisted Selection of Novel Bacteria Contributing to Soil‐Borne Plant Disease Suppression
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    Chapter 61 Combined Effects of Wheat Roots and Pathogenic Fungus Gaeumannomyces graminis var. tritici on Gene Expression of the Biocontrol Bacterium Pseudomonas fluorescens Pf29Arp
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    Chapter 62 Biocontrol of Tree Root Diseases
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    Chapter 63 Plant Growth Modulation by Bacterial Volatiles—A Focus on Burkholderia Species
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    Chapter 64 Plant Growth Promoting Microorganisms: The Road from an Academically Promising Result to a Commercial Product
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    Chapter 65 The Effect of Agricultural Practices on Resident Soil Microbial Communities: Focus on Biocontrol and Biofertilization
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    Chapter 66 Biofilm Formation in the Rhizosphere: Multispecies Interactions and Implications for Plant Growth
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    Chapter 67 Probiotics for Plants: Rhizospheric Microbiome and Plant Fitness
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    Chapter 68 Motility, Biofilm Formation, and Rhizosphere Colonization by Pseudomonas fluorescens F113
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    Chapter 69 CMEIAS: An Improved Computing Technology for Quantitative Image Analysis of Root Colonization by Rhizobacteria In Situ At Single‐Cell Resolution
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    Chapter 70 Understanding Root–Microbiome Interactions
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    Chapter 71 An Inter‐Kingdom Signaling Mechanism in Rhizosphere Pseudomonas
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    Chapter 72 N‐Acyl‐homoserine‐Lactone Quorum‐Sensing Signaling in Phenazine and Cyclic Lipopeptide‐Producing Pseudomonas sp. CMR12a from the Red Cocoyam Rhizosphere
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    Chapter 73 The Response of Plants toward N‐Acyl Homoserine Lactones of Quorum‐Sensing‐Active Bacteria in the Rhizosphere
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    Chapter 74 In Situ Calling Distances and High Population Independent N‐Acylhomoserine Lactone‐Mediated Communication on Plant Root Surfaces
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    Chapter 75 Quorum‐Sensing Quenching by Volatile Organic Compounds Emitted by Rhizosphere Bacteria
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    Chapter 76 The Biological Significance of the Degradation of N‐Acyl Homoserine Lactones—Quorum Sensing and Quorum Quenching in Burkholderia and Agrobacterium
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    Chapter 77 Altering Plant–Microbe Interactions Through Artificially Manipulating Bacterial Quorum Sensing
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    Chapter 78 Rhizosphere Microbial Communication in Soil Nutrient Acquisition
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    Chapter 79 Agony to Harmony—What Decides? Calcium Signaling in Beneficial and Pathogenic Plant–Fungus Interactions—What We Can Learn from the Arabidopsis/Piriformospora indica Symbiosis
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    Chapter 80 Genome Transcriptome Analysis and Functional Characterization of a Nitrogen‐Fixation Island in Root‐Associated Pseudomonas stutzeri
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    Chapter 81 Molecular Microbial Ecology of the Rhizosphere
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    Chapter 82 Identification and Mutational Activation of Niche‐Specific Genes Provide Insight into Regulatory Networks and Bacterial Function in Complex Environments
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    Chapter 83 Comparative Analysis of the Complete Genome Sequence of the Plant Growth‐Promoting Bacterium Bacillus amyloliquefaciens FZB42
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    Chapter 84 Genome Sequence of the Plant Growth‐Promoting Endophytic Bacterium Enterobacter sp. 638
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    Chapter 85 Approaches for the Design of Genetically Engineered Bacteria for Ecological Studies and Biotechnological Applications
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    Chapter 86 Construction of Signature‐Tagged Mutant Libraries and Its Application to Plant‐Symbiotic Bacteria
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    Chapter 87 Use of DOPE‐FISH Tool to Better Visualize Colonization of Plants by Beneficial Bacteria? An Example with Saccharothrix algeriensis NRRL B‐24137 Colonizing Grapevine Plants
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    Chapter 88 Combining Rhizobox, Reporter Gene Systems, and Molecular Analyses to Assess the Effects of Humic Substances on Plant–Microbes Interactions in Soil Rhizosphere
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    Chapter 89 Multiparameter Flow Cytometry for Characterization of Physiological States in Pseudomonas Fluorescens DR54 Biocontrol Inoculants Under Dry Formulation and Long‐Term Storage in Clay Carrier
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    Chapter 90 Endophytic Lifestyle of Biocontrol Strains of Pseudomonas spp. in Olive Roots
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    Chapter 91 Improving Phytoremediation through Plant‐Associated Bacteria
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    Chapter 92 Ecology of Alkane‐Degrading Bacteria and Their Interaction with the Plant
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    Chapter 93 Abiotic Stress Remediation by the Arbuscular Mycorrhizal Symbiosis and Rhizosphere Bacteria/Yeast Interactions
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    Chapter 94 Potential Plant‐Growth‐Promoting and Nitrogen‐Fixing Bacteria Associated with Pioneer Plants Growing on Mine Tailings
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    Chapter 95 Stimulation of Rhizosphere Microbial Communities During Chemophytostabilization of a Pb–Zn Mine Soil
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    Chapter 96 Arbuscular Mycorrhiza in Glucosinolate‐Containing Plants: The Story of the Metal Hyperaccumulator Noccaea (Thlaspi) praecox (Brassicaceae)
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    Chapter 97 Novel Metal‐Resistance Genes from the Rhizosphere of Extreme Environments: A Functional Metagenomics Approach
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    Chapter 98 Soil Warming Effects on Beneficial Plant–Microbe Interactions
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    Chapter 99 Soil Respiration, Climate Change, and the Role of Microbial Communities
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    Chapter 100 Rhizosphere Responses to Elevated CO2
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    Chapter 101 Applying Stable Isotope Probing of Phospholipid Fatty Acids and Ribosomal RNA in Rice Fields to Study the Composition of the Active Methanotrophic Bacterial Community In Situ
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    Chapter 102 Impact of Mangrove Roots on Bacterial Composition
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    Chapter 103 Prediction of an Ectomycorrhizal Metabolome from Transcriptomic Data
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    Chapter 104 Metagenomic Analysis of the Rhizosphere Soil Microbial Community
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    Chapter 105 Bacterial Diversity in Rhizosphere Soil from Antarctic Vascular Plants of Admiralty Bay in Maritime Antarctica
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    Chapter 106 Arbuscular Mycorrhizal Fungi throughout the Year: Using Massively Parallel Pyrosequencing to Quantify Spatiotemporal Seasonal Dynamics
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    Chapter 107 Transcriptomics and Metatranscriptomic Analysis of the Response of Rhizosphere Bacteria to Environmental Change
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    Chapter 108 Unraveling the Rhizosphere Using the cpn 60 Genomic Marker and Pyrosequencing
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    Chapter 109 Rhizosphere Metatranscriptomics: Challenges and Opportunities
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    Chapter 110 The “Biased Rhizosphere” Concept and Advances in the Omics Era to Study Bacterial Competitiveness and Persistence in the Phytosphere
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    Chapter 111 Bacterial Inositol Catabolism—A Sweet Ride into the Host
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    Chapter 112 Exogenous Glucosinolate Produced by Transgenic Arabidopsis thaliana has an Impact on Microbes in the Rhizosphere and Plant Roots
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    Chapter 113 Reciprocal Interactions between Plants and Fluorescent Pseudomonads in Relation to Iron in the Rhizosphere
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    Chapter 114 Enhancement of Plant–Microbe Interactions using Rhizosphere Metabolomics‐Driven Approach and its Application in the Removal of Polychlorinated Biphenyls
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    Chapter 115 Rhizophagy-A New Dimension of Plant-Microbe Interactions
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    Chapter 116 The Rhizosphere as a Reservoir for Opportunistic Human Pathogenic Bacteria
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    Chapter 117 Mechanisms of Plant Colonization by Human Pathogenic Bacteria: An Emphasis on the Roots and Rhizosphere
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    Chapter 118 Perspectives for Rhizosphere Research
Attention for Chapter 115: Rhizophagy-A New Dimension of Plant-Microbe Interactions
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Chapter title
Rhizophagy-A New Dimension of Plant-Microbe Interactions
Chapter number 115
Book title
Molecular Microbial Ecology of the Rhizosphere: Volume 1 & 2
Published by
John Wiley & Sons, Inc., March 2013
DOI 10.1002/9781118297674.ch115
Book ISBNs
978-1-118-29767-4, 978-1-118-29617-2
Authors

Paungfoo-Lonhienne, Chanyarat, Schmidt, Susanne, Webb, Richard I., Lonhienne, Thierry G. A., Paungfoo‐Lonhienne, Chanyarat

Editors

Frans J. de Bruijn

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 17 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 17 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 3 18%
Other 2 12%
Lecturer > Senior Lecturer 1 6%
Student > Bachelor 1 6%
Student > Doctoral Student 1 6%
Other 2 12%
Unknown 7 41%
Readers by discipline Count As %
Agricultural and Biological Sciences 5 29%
Environmental Science 2 12%
Biochemistry, Genetics and Molecular Biology 2 12%
Pharmacology, Toxicology and Pharmaceutical Science 1 6%
Engineering 1 6%
Other 0 0%
Unknown 6 35%