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Identification of Putative Candidate Genes for Water Stress Tolerance in Canola (Brassica napus)

Overview of attention for article published in Frontiers in Plant Science, November 2015
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Title
Identification of Putative Candidate Genes for Water Stress Tolerance in Canola (Brassica napus)
Published in
Frontiers in Plant Science, November 2015
DOI 10.3389/fpls.2015.01058
Pubmed ID
Authors

Jing Zhang, Annaliese S. Mason, Jian Wu, Sheng Liu, Xuechen Zhang, Tao Luo, Robert Redden, Jacqueline Batley, Liyong Hu, Guijun Yan

Abstract

Drought stress can directly inhibit seedling establishment in canola (Brassica napus), resulting in lower plant densities and reduced yields. To dissect this complex trait, 140 B. napus accessions were phenotyped under normal (0.0 MPa, S0) and water-stressed conditions simulated by polyethylene glycol (PEG) 6000 (-0.5 MPa, S5) in a hydroponic system. Phenotypic variation and heritability indicated that the root to shoot length ratio was a reliable indicator for water stress tolerance. Thereafter, 66 accessions (16 water stress tolerant, 34 moderate and 16 sensitive lines) were genotyped using 25,495 Brassica single nucleotide polymorphisms (SNPs). Genome-wide association studies (GWAS) identified 16 loci significantly associated with water stress response. Two B. napus accessions were used for RNA sequencing, with differentially-expressed genes under normal and water-stressed conditions examined. By combining differentially-expressed genes detected by RNA sequencing with significantly associated loci from GWAS, 79 candidate genes were identified, of which eight were putatively associated with drought tolerance based on gene ontology of Arabidopsis. Functional validation of these genes may confirm key drought-related genes for selection and breeding in B. napus. Our results provide insight into the genetic basis of water stress tolerance in canola.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 89 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 89 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 21 24%
Researcher 12 13%
Student > Master 11 12%
Student > Bachelor 6 7%
Professor 3 3%
Other 11 12%
Unknown 25 28%
Readers by discipline Count As %
Agricultural and Biological Sciences 48 54%
Biochemistry, Genetics and Molecular Biology 10 11%
Environmental Science 1 1%
Psychology 1 1%
Physics and Astronomy 1 1%
Other 0 0%
Unknown 28 31%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 08 December 2015.
All research outputs
#15,351,145
of 22,834,308 outputs
Outputs from Frontiers in Plant Science
#10,852
of 20,146 outputs
Outputs of similar age
#227,035
of 387,438 outputs
Outputs of similar age from Frontiers in Plant Science
#202
of 418 outputs
Altmetric has tracked 22,834,308 research outputs across all sources so far. This one is in the 22nd percentile – i.e., 22% of other outputs scored the same or lower than it.
So far Altmetric has tracked 20,146 research outputs from this source. They receive a mean Attention Score of 4.0. This one is in the 40th percentile – i.e., 40% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 387,438 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 32nd percentile – i.e., 32% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 418 others from the same source and published within six weeks on either side of this one. This one is in the 47th percentile – i.e., 47% of its contemporaries scored the same or lower than it.