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Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in prostate cancer

Overview of attention for article published in Nature Communications, March 2016
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (88th percentile)
  • Above-average Attention Score compared to outputs of the same age and source (55th percentile)

Mentioned by

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21 X users
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3 patents
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1 Facebook page
googleplus
1 Google+ user

Citations

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269 Dimensions

Readers on

mendeley
215 Mendeley
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1 CiteULike
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Title
Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in prostate cancer
Published in
Nature Communications, March 2016
DOI 10.1038/ncomms10982
Pubmed ID
Authors

Zhou Du, Tong Sun, Ezgi Hacisuleyman, Teng Fei, Xiaodong Wang, Myles Brown, John L. Rinn, Mary Gwo-Shu Lee, Yiwen Chen, Philip W. Kantoff, X. Shirley Liu

Abstract

Mounting evidence suggests that long noncoding RNAs (lncRNAs) can function as microRNA sponges and compete for microRNA binding to protein-coding transcripts. However, the prevalence, functional significance and targets of lncRNA-mediated sponge regulation of cancer are mostly unknown. Here we identify a lncRNA-mediated sponge regulatory network that affects the expression of many protein-coding prostate cancer driver genes, by integrating analysis of sequence features and gene expression profiles of both lncRNAs and protein-coding genes in tumours. We confirm the tumour-suppressive function of two lncRNAs (TUG1 and CTB-89H12.4) and their regulation of PTEN expression in prostate cancer. Surprisingly, one of the two lncRNAs, TUG1, was previously known for its function in polycomb repressive complex 2 (PRC2)-mediated transcriptional regulation, suggesting its sub-cellular localization-dependent function. Our findings not only suggest an important role of lncRNA-mediated sponge regulation in cancer, but also underscore the critical influence of cytoplasmic localization on the efficacy of a sponge lncRNA.

X Demographics

X Demographics

The data shown below were collected from the profiles of 21 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 215 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 2 <1%
Germany 2 <1%
Denmark 1 <1%
Unknown 210 98%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 61 28%
Researcher 39 18%
Student > Master 23 11%
Student > Bachelor 15 7%
Student > Postgraduate 11 5%
Other 32 15%
Unknown 34 16%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 79 37%
Agricultural and Biological Sciences 60 28%
Medicine and Dentistry 15 7%
Computer Science 5 2%
Pharmacology, Toxicology and Pharmaceutical Science 4 2%
Other 12 6%
Unknown 40 19%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 15. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 06 June 2023.
All research outputs
#2,291,981
of 25,142,442 outputs
Outputs from Nature Communications
#27,801
of 55,505 outputs
Outputs of similar age
#35,872
of 305,858 outputs
Outputs of similar age from Nature Communications
#382
of 863 outputs
Altmetric has tracked 25,142,442 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 90th percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 55,505 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 55.9. This one is in the 49th percentile – i.e., 49% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 305,858 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 88% of its contemporaries.
We're also able to compare this research output to 863 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 55% of its contemporaries.