DNA Computing and Molecular Programming

Chapter 1 Chemical Reaction Networks and Stochastic Local Search

Chapter 2 Implementing Arbitrary CRNs Using Strand Displacing Polymerase

Chapter 3 Real-Time Equivalence of Chemical Reaction Networks and Analog Computers

Chapter 4 A Reaction Network Scheme Which Implements Inference and Learning for Hidden Markov Models

Chapter 5 Efficient Parameter Estimation for DNA Kinetics Modeled as Continuous-Time Markov Chains

Chapter 6 New Bounds on the Tile Complexity of Thin Rectangles at Temperature-1

Chapter 7 Non-cooperatively Assembling Large Structures

Chapter 8 Simulation of Programmable Matter Systems Using Active Tile-Based Self-Assembly

Chapter 9 Combined Amplification and Molecular Classification for Gene Expression Diagnostics

Chapter 10 Reversible Computation Using Swap Reactions on a Surface

Chapter 11 Error-Free Stable Computation with Polymer-Supplemented Chemical Reaction Networks

Chapter 12 SIMD||DNA: Single Instruction, Multiple Data Computation with DNA Strand Displacement Cascades