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Evolutionary Genomics

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Cover of 'Evolutionary Genomics'

Table of Contents

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    Book Overview
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    Chapter 1 Tangled Trees: The Challenge of Inferring Species Trees from Coalescent and Noncoalescent Genes
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    Chapter 2 Modeling Gene Family Evolution and Reconciling Phylogenetic Discord
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    Chapter 3 Genome-wide comparative analysis of phylogenetic trees: the prokaryotic forest of life.
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    Chapter 4 Philosophy and Evolution: Minding the Gap Between Evolutionary Patterns and Tree-Like Patterns
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    Chapter 5 Selection on the Protein-Coding Genome
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    Chapter 6 Methods to Detect Selection on Noncoding DNA
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    Chapter 7 The Origin and Evolution of New Genes
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    Chapter 8 Evolution of protein domain architectures.
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    Chapter 9 Estimating recombination rates from genetic variation in humans.
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    Chapter 10 Evolution of Viral Genomes: Interplay Between Selection, Recombination, and Other Forces
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    Chapter 11 Association Mapping and Disease: Evolutionary Perspectives
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    Chapter 12 Ancestral Population Genomics
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    Chapter 13 Nonredundant Representation of Ancestral Recombinations Graphs
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    Chapter 14 Using Genomic Tools to Study Regulatory Evolution
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    Chapter 15 Characterization and Evolutionary Analysis of Protein–Protein Interaction Networks
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    Chapter 16 Statistical methods in metabolomics.
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    Chapter 17 Introduction to the Analysis of Environmental Sequences: Metagenomics with MEGAN
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    Chapter 18 Analyzing epigenome data in context of genome evolution and human diseases.
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    Chapter 19 Genetical Genomics for Evolutionary Studies
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    Chapter 20 Genomics Data Resources: Frameworks and Standards
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    Chapter 21 Sharing programming resources between bio* projects through remote procedure call and native call stack strategies.
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    Chapter 22 Scalable computing for evolutionary genomics.
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Title
Evolutionary Genomics
Published by
Evolutionary Genomics Statistical and Computational Methods Volume 2, January 2012
DOI 10.1007/978-1-61779-585-5
ISBNs
978-1-61779-584-8, 978-1-61779-585-5
Editors

Anisimova, Maria

Abstract

Phylogenies based on different genes can produce conflicting phylogenies; methods that resolve such ambiguities are becoming more popular, and offer a number of advantages for phylogenetic analysis. We review so-called species tree methods and the biological forces that can undermine them by violating important aspects of the underlying models. Such forces include horizontal gene transfer, gene duplication, and natural selection. We review ways of detecting loci influenced by such forces and offer suggestions for identifying or accommodating them. The way forward involves identifying outlier loci, as is done in population genetic analysis of neutral and selected loci, and removing them from further analysis, or developing more complex species tree models that can accommodate such loci.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 18 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 18 100%

Demographic breakdown

Readers by professional status Count As %
Student > Master 7 39%
Student > Ph. D. Student 3 17%
Student > Bachelor 2 11%
Lecturer 1 6%
Student > Doctoral Student 1 6%
Other 1 6%
Unknown 3 17%
Readers by discipline Count As %
Agricultural and Biological Sciences 6 33%
Biochemistry, Genetics and Molecular Biology 5 28%
Computer Science 1 6%
Pharmacology, Toxicology and Pharmaceutical Science 1 6%
Unknown 5 28%