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Principles of metadata organization at the ENCODE data coordination center

Overview of attention for article published in Database: The Journal of Biological Databases & Curation, March 2016
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  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (88th percentile)
  • High Attention Score compared to outputs of the same age and source (89th percentile)

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1 blog
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8 X users
wikipedia
3 Wikipedia pages

Citations

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41 Dimensions

Readers on

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86 Mendeley
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1 CiteULike
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Title
Principles of metadata organization at the ENCODE data coordination center
Published in
Database: The Journal of Biological Databases & Curation, March 2016
DOI 10.1093/database/baw001
Pubmed ID
Authors

Eurie L. Hong, Cricket A. Sloan, Esther T. Chan, Jean M. Davidson, Venkat S. Malladi, J. Seth Strattan, Benjamin C. Hitz, Idan Gabdank, Aditi K. Narayanan, Marcus Ho, Brian T. Lee, Laurence D. Rowe, Timothy R. Dreszer, Greg R. Roe, Nikhil R. Podduturi, Forrest Tanaka, Jason A. Hilton, J. Michael Cherry

Abstract

The Encyclopedia of DNA Elements (ENCODE) Data Coordinating Center (DCC) is responsible for organizing, describing and providing access to the diverse data generated by the ENCODE project. The description of these data, known as metadata, includes the biological sample used as input, the protocols and assays performed on these samples, the data files generated from the results and the computational methods used to analyze the data. Here, we outline the principles and philosophy used to define the ENCODE metadata in order to create a metadata standard that can be applied to diverse assays and multiple genomic projects. In addition, we present how the data are validated and used by the ENCODE DCC in creating the ENCODE Portal (https://www.encodeproject.org/).Database URL: www.encodeproject.org.

X Demographics

X Demographics

The data shown below were collected from the profiles of 8 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 86 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United Kingdom 1 1%
Japan 1 1%
United States 1 1%
Bulgaria 1 1%
Unknown 82 95%

Demographic breakdown

Readers by professional status Count As %
Researcher 23 27%
Student > Ph. D. Student 19 22%
Student > Bachelor 9 10%
Other 6 7%
Student > Master 6 7%
Other 8 9%
Unknown 15 17%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 22 26%
Agricultural and Biological Sciences 20 23%
Computer Science 16 19%
Medicine and Dentistry 8 9%
Chemistry 2 2%
Other 3 3%
Unknown 15 17%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 15. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 11 August 2022.
All research outputs
#2,395,270
of 25,373,627 outputs
Outputs from Database: The Journal of Biological Databases & Curation
#97
of 1,043 outputs
Outputs of similar age
#37,540
of 314,269 outputs
Outputs of similar age from Database: The Journal of Biological Databases & Curation
#6
of 58 outputs
Altmetric has tracked 25,373,627 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 90th percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 1,043 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 6.3. This one has done particularly well, scoring higher than 90% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 314,269 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 88% of its contemporaries.
We're also able to compare this research output to 58 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 89% of its contemporaries.