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DNA Modifications

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Cover of 'DNA Modifications'

Table of Contents

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    Book Overview
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    Chapter 1 Modified Forms of Cytosine in Eukaryotes: DNA (De)methylation and Beyond
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    Chapter 2 Evidence for Noncytosine Epigenetic DNA Modifications in Multicellular Eukaryotes: An Overview
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    Chapter 3 Mass Spectrometry-Based Analysis of DNA Modifications: Potential Applications in Basic Research and Clinic
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    Chapter 4 Mapping DNA Methylation in Mammals: The State of the Art
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    Chapter 5 Detection of Modified Bases in Bacteriophage Genomic DNA
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    Chapter 6 Liquid Chromatography–Mass Spectrometry Analysis of Cytosine Modifications
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    Chapter 7 Detection of DNA Methylation in Genomic DNA by UHPLC-MS/MS
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    Chapter 8 Quantification of DNA Modifications Using Two-Dimensional Ultraperformance Liquid Chromatography Tandem Mass Spectrometry (2D-UPLC-MS/MS)
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    Chapter 9 MS Analysis of DNA Modifications in Urinary/Body Fluids
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    Chapter 10 Preparation of Internal Standards for 2D-UPLC-MS/MS Quantification of Noncanonical DNA Bases
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    Chapter 11 Detection of TET-Oxidized 5-Methylcytosine Bases by Capillary Gel Electrophoresis
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    Chapter 12 Immunochemical Detection of Modified Cytosine Species in Mammalian Preimplantation Embryos
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    Chapter 13 Immunochemical Detection of Modified Cytosine Species in Lampbrush Chromatin
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    Chapter 14 Detection of Low-Abundance DNA Modifications Using Signal Amplification-Based Immunocytochemistry
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    Chapter 15 Immunohistochemical Detection of Modified Cytosine Bases in Rodent Brain
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    Chapter 16 Immunohistochemical Detection of 5-Hydroxymethylcytosine and 5-Carboxylcytosine in Sections of Zebrafish Embryos
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    Chapter 17 Immunochemical Detection of Modified Species of Cytosine in Plant Tissues
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    Chapter 18 Antigen Retrieval for Immunostaining of Modified Cytosine Species
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    Chapter 19 Computational Analysis of DNA Modifications in Confocal Images
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    Chapter 20 Three-Dimensional Confocal Analysis of Chromosome Positioning Coupled with Immunofluorescence in Mouse Sperm Nuclei
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    Chapter 21 Analysis of 5-Hydroxymethyluracil Levels Using Flow Cytometry
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    Chapter 22 Hairpin-Bisulfite PCR
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    Chapter 23 Genome-Wide Mapping of DNA Methylation 5mC by Methylated DNA Immunoprecipitation (MeDIP)-Sequencing
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    Chapter 24 Analysis of 5-Carboxylcytosine Distribution Using DNA Immunoprecipitation
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    Chapter 25 High-Resolution Analysis of 5-Hydroxymethylcytosine by TET-Assisted Bisulfite Sequencing
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    Chapter 26 Oxidative Bisulfite Sequencing: An Experimental and Computational Protocol
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    Chapter 27 Bisulfite-Free Sequencing of 5-Hydroxymethylcytosine with APOBEC-Coupled Epigenetic Sequencing (ACE-Seq)
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    Chapter 28 Single-Nucleotide-Resolution Sequencing of N6-Methyldeoxyadenosine
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    Chapter 29 Design and Application of DNA Modification-Specific Transcription-Activator-Like Effectors
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    Chapter 30 Notes on Functional Modules in the Assembly of CRISPR/Cas9-Mediated Epigenetic Modifiers
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    Chapter 31 Analyzing DNA-Immunoprecipitation Sequencing Data
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    Chapter 32 Bioinformatics Analysis of DNA Methylation Through Bisulfite Sequencing Data
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    Chapter 33 Unified Analysis of Multiple ChIP-Seq Datasets
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    Chapter 34 Integrated Analysis of DNA Methylation, Hydroxymethylation, and Gene Expression Data Using ME-Class2
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Title
DNA Modifications
Published by
Springer US, January 2021
DOI 10.1007/978-1-0716-0876-0
ISBNs
978-1-07-160875-3, 978-1-07-160876-0
Editors

Alexey Ruzov, Martin Gering

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