Title |
Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium
|
---|---|
Published in |
Brazilian Journal of Microbiology, October 2017
|
DOI | 10.1016/j.bjm.2017.07.005 |
Pubmed ID | |
Authors |
Paula Renata Alves da Silva, Jean Luiz Simões-Araújo, Márcia Soares Vidal, Leonardo Magalhães Cruz, Emanuel Maltempi de Souza, José Ivo Baldani |
Abstract |
Paraburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidating the mechanisms involved in its interaction mainly with Poaceae. A genome size of approximately 8.75Mb containing 7844 protein coding genes distributed in 526 subsystems was de novo assembled with ABySS and annotated by RAST. Genes related to the nitrogen fixation process, the secretion systems (I, II, III, IV, and VI), and related to a variety of metabolic traits, such as metabolism of carbohydrates, amino acids, vitamins, and proteins, were detected, suggesting a broad metabolic capacity and possible adaptation to plant association. |
X Demographics
Geographical breakdown
Country | Count | As % |
---|---|---|
Unknown | 1 | 100% |
Demographic breakdown
Type | Count | As % |
---|---|---|
Members of the public | 1 | 100% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
Unknown | 33 | 100% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Student > Ph. D. Student | 5 | 15% |
Researcher | 4 | 12% |
Lecturer | 2 | 6% |
Student > Doctoral Student | 2 | 6% |
Other | 2 | 6% |
Other | 5 | 15% |
Unknown | 13 | 39% |
Readers by discipline | Count | As % |
---|---|---|
Agricultural and Biological Sciences | 10 | 30% |
Environmental Science | 4 | 12% |
Computer Science | 1 | 3% |
Immunology and Microbiology | 1 | 3% |
Psychology | 1 | 3% |
Other | 2 | 6% |
Unknown | 14 | 42% |