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Sequence‐Based Introgression Mapping Identifies Candidate White Mold Tolerance Genes in Common Bean

Overview of attention for article published in The Plant Genome, July 2016
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  • Above-average Attention Score compared to outputs of the same age (64th percentile)
  • Good Attention Score compared to outputs of the same age and source (75th percentile)

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1 X user
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3 patents

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30 Mendeley
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Article details
Title
Sequence‐Based Introgression Mapping Identifies Candidate White Mold Tolerance Genes in Common Bean
Published in
The Plant Genome, July 2016
DOI 10.3835/plantgenome2015.09.0092
Pubmed ID
Authors
Abstract

White mold, caused by the necrotrophic fungus (Lib.) de Bary, is a major disease of common bean ( L.). WM7.1 and WM8.3 are two quantitative trait loci (QTL) with major effects on tolerance to the pathogen. Advanced backcross populations segregating individually for either of the two QTL, and a recombinant inbred (RI) population segregating for both QTL were used to fine map and confirm the genetic location of the QTL. The QTL intervals were physically mapped using the reference common bean genome sequence, and the physical intervals for each QTL were further confirmed by sequence-based introgression mapping. Using whole-genome sequence data from susceptible and tolerant DNA pools, introgressed regions were identified as those with significantly higher numbers of single-nucleotide polymorphisms (SNPs) relative to the whole genome. By combining the QTL and SNP data, WM7.1 was located to a 660-kb region that contained 41 gene models on the proximal end of chromosome Pv07, while the WM8.3 introgression was narrowed to a 1.36-Mb region containing 70 gene models. The most polymorphic candidate gene in the WM7.1 region encodes a BEACH-domain protein associated with apoptosis. Within the WM8.3 interval, a receptor-like protein with the potential to recognize pathogen effectors was the most polymorphic gene. The use of gene and sequence-based mapping identified two candidate genes whose putative functions are consistent with the current model of pathogenicity.

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X Demographics

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Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 30 Mendeley readers of this research output. Click here to see the associated Mendeley record.
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Geographical breakdown

Geographical breakdown
Country Count As %
United States 1 3%
Unknown 29 97%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Researcher 10 33%
Student > Doctoral Student 3 10%
Student > Bachelor 3 10%
Student > Ph. D. Student 2 7%
Student > Master 2 7%
Other 2 7%
Unknown 8 27%
Readers by discipline
Readers by discipline Count As %
Agricultural and Biological Sciences 17 57%
Biochemistry, Genetics and Molecular Biology 4 13%
Unknown 9 30%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 4. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 30 July 2024.
All research outputs
#10,157,651
of 31,346,776 outputs
Outputs from The Plant Genome
#282
of 875 outputs
Outputs of similar age
#112,535
of 326,811 outputs
Outputs of similar age from The Plant Genome
#6
of 36 outputs
Altmetric has tracked 31,346,776 research outputs across all sources so far. This one has received more attention than most of these and is in the 66th percentile.
So far Altmetric has tracked 875 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.1. This one has gotten more attention than average, scoring higher than 66% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 326,811 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 64% of its contemporaries.
We're also able to compare this research output to 36 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 75% of its contemporaries.