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Deep Clonal Profiling of Formalin Fixed Paraffin Embedded Clinical Samples

Overview of attention for article published in PLOS ONE, November 2012
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (93rd percentile)
  • High Attention Score compared to outputs of the same age and source (88th percentile)

Mentioned by

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6 X users
patent
9 patents
facebook
1 Facebook page

Readers on

mendeley
102 Mendeley
citeulike
1 CiteULike
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Article details
Title
Deep Clonal Profiling of Formalin Fixed Paraffin Embedded Clinical Samples
Published in
PLOS ONE, November 2012
DOI 10.1371/journal.pone.0050586
Pubmed ID
Authors
Abstract

Formalin fixed paraffin embedded (FFPE) tissues are a vast resource of annotated clinical samples. As such, they represent highly desirable and informative materials for the application of high definition genomics for improved patient management and to advance the development of personalized therapeutics. However, a limitation of FFPE tissues is the variable quality of DNA extracted for analyses. Furthermore, admixtures of non-tumor and polyclonal neoplastic cell populations limit the number of biopsies that can be studied and make it difficult to define cancer genomes in patient samples. To exploit these valuable tissues we applied flow cytometry-based methods to isolate pure populations of tumor cell nuclei from FFPE tissues and developed a methodology compatible with oligonucleotide array CGH and whole exome sequencing analyses. These were used to profile a variety of tumors (breast, brain, bladder, ovarian and pancreas) including the genomes and exomes of matching fresh frozen and FFPE pancreatic adenocarcinoma samples.

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X Demographics

X Demographics

The data shown below were collected from the profiles of 6 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 102 Mendeley readers of this research output. Click here to see the associated Mendeley record.
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Geographical breakdown

Geographical breakdown
Country Count As %
United States 1 <1%
Netherlands 1 <1%
Germany 1 <1%
Unknown 99 97%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Student > Ph. D. Student 23 23%
Researcher 23 23%
Other 10 10%
Student > Master 6 6%
Student > Postgraduate 6 6%
Other 18 18%
Unknown 16 16%
Readers by discipline
Readers by discipline Count As %
Agricultural and Biological Sciences 37 36%
Medicine and Dentistry 27 26%
Biochemistry, Genetics and Molecular Biology 14 14%
Veterinary Science and Veterinary Medicine 1 <1%
Pharmacology, Toxicology and Pharmaceutical Science 1 <1%
Other 2 2%
Unknown 20 20%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 17. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 20 January 2026.
All research outputs
#2,865,983
of 34,517,649 outputs
Outputs from PLOS ONE
#30,800
of 224,969 outputs
Outputs of similar age
#22,724
of 344,831 outputs
Outputs of similar age from PLOS ONE
#554
of 5,011 outputs
Altmetric has tracked 34,517,649 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 91st percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 224,969 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 17.2. This one has done well, scoring higher than 86% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 344,831 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 93% of its contemporaries.
We're also able to compare this research output to 5,011 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 88% of its contemporaries.