Advances in Computational Biology

Table of Contents

1. Altmetric Badge
   Book Overview
2. Altmetric Badge
   Chapter 1 A Classification Method Based on Similarity Measures of Generalized Fuzzy Numbers in Building Expert System for Postoperative Patients
3. Altmetric Badge
   Chapter 2 Efficient support vector machine method for survival prediction with SEER data.
4. Altmetric Badge
   Chapter 3 Searching Maximal Degenerate Motifs Guided by a Compact Suffix Tree
5. Altmetric Badge
   Chapter 4 Exploring Motif Composition of Eukaryotic Promoter Regions
6. Altmetric Badge
   Chapter 5 Large-Scale Analysis of Phylogenetic Search Behavior
7. Altmetric Badge
   Chapter 6 Silicosection and Elucidation of the Plant Circadian Clock Using Bayesian Classifiers and New Genemining Algorithm
8. Altmetric Badge
   Chapter 7 ChemBrowser: A Flexible Framework for Mining Chemical Documents
9. Altmetric Badge
   Chapter 8 Experimental Study of Modified Voting Algorithm for Planted (l,d)-Motif Problem
10. Altmetric Badge
    Chapter 9 Prediction of Severe Sepsis Using SVM Model
11. Altmetric Badge
    Chapter 10 Online Multi-divisive Hierarchical Clustering for On-Body Sensor Data
12. Altmetric Badge
    Chapter 11 On Quality Assurance and Assessment of Biological Datasets and Related Statistics
13. Altmetric Badge
    Chapter 12 Pattern Recognition-Informed Feedback for Nanopore Detector Cheminformatics
14. Altmetric Badge
    Chapter 13 An MLP Neural Network for ECG Noise Removal Based on Kalman Filter
15. Altmetric Badge
    Chapter 14 Discovery of Structural Motifs Using Protein Structural Alphabets and 1D Motif-Finding Methods
16. Altmetric Badge
    Chapter 15 Biological Databases at DNA Data Bank of Japan in the Era of Next-Generation Sequencing Technologies
17. Altmetric Badge
    Chapter 16 Comparison of Microarray Preprocessing Methods
18. Altmetric Badge
    Chapter 17 A Robust Ensemble Classification Method Analysis
19. Altmetric Badge
    Chapter 18 k-NN for the Classification of Human Cancer Samples Using the Gene Expression Profiles
20. Altmetric Badge
    Chapter 19 The Application of Regular Expression-Based Pattern Matching to Profiling the Developmental Factors that Contribute to the Development of the Inner Ear
21. Altmetric Badge
    Chapter 20 Functionally Informative Tag SNP Selection Using a Pareto-Optimal Approach
22. Altmetric Badge
    Chapter 21 KMeans Greedy Search Hybrid Algorithm for Biclustering Gene Expression Data
23. Altmetric Badge
    Chapter 22 Robust Stability Analysis and Design Under Consideration of Multiple Feedback Loops of the Tryptophan Regulatory Network of Escherichia coli
24. Altmetric Badge
    Chapter 23 FM-GA and CM-GA for Gene Microarray Analysis
25. Altmetric Badge
    Chapter 24 Novel Features for Automated Cell Phenotype Image Classification
26. Altmetric Badge
    Chapter 25 A Relational Fuzzy C-Means Algorithm for Detecting Protein Spots in Two-Dimensional Gel Images
27. Altmetric Badge
    Chapter 26 Assigning Probabilities to Mascot Peptide Identification Using Logistic Regression
28. Altmetric Badge
    Chapter 27 Genome-Wide EST Data Mining Approaches to Resolving Incongruence of Molecular Phylogenies
29. Altmetric Badge
    Chapter 28 Building a Parallel Between Structural and Topological Properties
30. Altmetric Badge
    Chapter 29 GNCPro: Navigate Human Genes and Relationships Through Net-Walking
31. Altmetric Badge
    Chapter 30 Small-Scale Modeling Approach and Circuit Wiring of the Unfolded Protein Response in Mammalian Cells
32. Altmetric Badge
    Chapter 31 Random-Walk Mechanism in the Genetic Recombination
33. Altmetric Badge
    Chapter 32 Critical Assessment of Side Chain Conformation Prediction in Modelling of Single Point Amino Acid Mutation
34. Altmetric Badge
    Chapter 33 Temporal Anomaly Detection: An Artificial Immune Approach Based on T Cell Activation, Clonal Size Regulation and Homeostasis
35. Altmetric Badge
    Chapter 34 An Integrated Methodology for Mining Promiscuous Proteins: A Case Study of an Integrative Bioinformatics Approach for Hepatitis C Virus Non-structural 5a Protein
36. Altmetric Badge
    Chapter 35 Enhanced Prediction of Conformational Flexibility and Phosphorylation in Proteins
37. Altmetric Badge
    Chapter 36 Why Are MD Simulated Protein Folding Times Wrong?
38. Altmetric Badge
    Chapter 37 Automatic TEM Image Analysis of Membranes for 2D Crystal Detection
39. Altmetric Badge
    Chapter 38 High Performance Computing Approaches for 3D Reconstruction of Complex Biological Specimens
40. Altmetric Badge
    Chapter 39 Protein Identification Using Receptor Arrays and Mass Spectrometry
41. Altmetric Badge
    Chapter 40 Assessing Consistency Between Versions of Genotype-Calling Algorithm Birdseed for the Genome-Wide Human SNP Array 6.0 Using HapMap Samples
42. Altmetric Badge
    Chapter 41 An Overview of the BioExtract Server: A Distributed, Web-Based System for Genomic Analysis
43. Altmetric Badge
    Chapter 42 A Deterministic DNA Database Search
44. Altmetric Badge
    Chapter 43 Taxonomic Parsing of Bacteriophages Using Core Genes and In Silico Proteome-Based CGUG and Applications to Small Bacterial Genomes
45. Altmetric Badge
    Chapter 44 Analysis of Gene Translation Using a Communications Theory Approach
46. Altmetric Badge
    Chapter 45 A Fast and Efficient Algorithm for Mapping Short Sequences to a Reference Genome
47. Altmetric Badge
    Chapter 46 Sequence Analysis and Homology Modeling Gallus gallus Glutathione S-transferase (Q08392)
48. Altmetric Badge
    Chapter 47 Toward Optimizing the Cache Performance of Suffix Trees for Sequence Analysis Algorithms Suffix Tree Cache Performance Optimization
49. Altmetric Badge
    Chapter 48 Toward a Visualization of DNA Sequences
50. Altmetric Badge
    Chapter 49 A Practical Approach for Computing the Active Site of the Ribonucleoside Hydrolase of E. coli Encoded by rihC
51. Altmetric Badge
    Chapter 50 Addressing the Docking Problem: Finding Similar 3-D Protein Envelopes for Computer-Aided Drug Design
52. Altmetric Badge
    Chapter 51 Simultaneous Pathogen Detection and Antibiotic Resistance Characterization Using SNP-Based Multiplexed Oligonucleotide Ligation-PCR (MOL-PCR)
53. Altmetric Badge
    Chapter 52 Specification and Verification of Pharmacokinetic Models
54. Altmetric Badge
    Chapter 53 Dehydron Analysis: Quantifying the Effect of Hydrophobic Groups on the Strength and Stability of Hydrogen Bonds
55. Altmetric Badge
    Chapter 54 Docking to large allosteric binding sites on protein surfaces.
56. Altmetric Badge
    Chapter 55 Modeling of ATP-Sensitive Inward Rectifier Potassium Channel 11 and Inhibition Mechanism of the Natural Ligand, Ellagic Acid, Using Molecular Docking
57. Altmetric Badge
    Chapter 56 GPU Acceleration of Dock6’s Amber Scoring Computation
58. Altmetric Badge
    Chapter 57 Discriminative Distance Functions and the Patient Neighborhood Graph for Clinical Decision Support
59. Altmetric Badge
    Chapter 58 A Scalable and Integrative System for Pathway Bioinformatics and Systems Biology
60. Altmetric Badge
    Chapter 59 Registration of In Vivo Fluorescence Endomicroscopy Images Based on Feature Detection
61. Altmetric Badge
    Chapter 60 Kinetic Models for Cancer Imaging
62. Altmetric Badge
    Chapter 61 Using Web and social media for influenza surveillance.
63. Altmetric Badge
    Chapter 62 CodeSlinger: A Case Study in Domain-Driven Interactive Tool Design for Biomedical Coding Scheme Exploration and Use
64. Altmetric Badge
    Chapter 63 DigitalLung: Application of High-Performance Computing to Biological System Simulation
65. Altmetric Badge
    Chapter 64 Consideration of Indices to Evaluate Age-Related Muscle Performance by Using Surface Electromyography
66. Altmetric Badge
    Chapter 65 Advances in Computational Biology
67. Altmetric Badge
    Chapter 66 Enhancing the Communication Flow Between Alzheimer Patients, Caregivers, and Neuropsychologists
68. Altmetric Badge
    Chapter 67 An Improved 1-D Gel Electrophoresis Image Analysis System
69. Altmetric Badge
    Chapter 68 A Fuzzy Approach for Contrast Enhancement of Mammography Breast Images
70. Altmetric Badge
    Chapter 69 Computational Modeling of a New Thrombectomy Device for the Extraction of Blood Clots
71. Altmetric Badge
    Chapter 70 NEURONSESSIONS: A Web-Based Collaborative Tool to Create Brain Computational Models
72. Altmetric Badge
    Chapter 71 Toward Automating an Inference Model on Unstructured Terminologies: OXMIS Case Study
73. Altmetric Badge
    Chapter 72 Semantic Content-Based Recommendations Using Semantic Graphs
74. Altmetric Badge
    Chapter 73 Modeling Membrane Localization: Case Study of a Ras Signaling Model
75. Altmetric Badge
    Chapter 74 A Study on Distributed PACS
76. Altmetric Badge
    Chapter 75 Epileptic EEG: A Comprehensive Study of Nonlinear Behavior
77. Altmetric Badge
    Chapter 76 Computational Energetic Model of Morphogenesis Based on Multi-agent Cellular Potts Model
78. Altmetric Badge
    Chapter 77 Standardizing the Next Generation of Bioinformatics Software Development with BioHDF (HDF5)
79. Altmetric Badge
    Chapter 78 Multisensor Smart System on a Chip
80. Altmetric Badge
    Chapter 79 Visual Presentation as a Welcome Alternative to Textual Presentation of Gene Annotation Information
81. Altmetric Badge
    Chapter 80 Automatic FRAP Analysis with Inhomogeneous Fluorescence Distribution and Movement Compensation
82. Altmetric Badge
    Chapter 81 Sorting Circular Permutations by Bounded Transpositions
83. Altmetric Badge
    Chapter 82 Annotating Patents with Medline MeSH Codes via Citation Mapping
84. Altmetric Badge
    Chapter 83 Some New Measures of Entropy, Useful Tools in Biocomputing
85. Altmetric Badge
    Chapter 84 Erratum to: Kinetic Models for Cancer Imaging