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A hierarchy of timescales in protein dynamics is linked to enzyme catalysis

Overview of attention for article published in Nature, November 2007
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (96th percentile)
  • Good Attention Score compared to outputs of the same age and source (77th percentile)

Mentioned by

blogs
3 blogs
patent
2 patents
wikipedia
1 Wikipedia page

Readers on

mendeley
942 Mendeley
citeulike
13 CiteULike
connotea
6 Connotea
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Article details
Title
A hierarchy of timescales in protein dynamics is linked to enzyme catalysis
Published in
Nature, November 2007
DOI 10.1038/nature06407
Pubmed ID
Authors
Abstract

The synergy between structure and dynamics is essential to the function of biological macromolecules. Thermally driven dynamics on different timescales have been experimentally observed or simulated, and a direct link between micro- to milli-second domain motions and enzymatic function has been established. However, very little is understood about the connection of these functionally relevant, collective movements with local atomic fluctuations, which are much faster. Here we show that pico- to nano-second timescale atomic fluctuations in hinge regions of adenylate kinase facilitate the large-scale, slower lid motions that produce a catalytically competent state. The fast, local mobilities differ between a mesophilic and hyperthermophilic adenylate kinase, but are strikingly similar at temperatures at which enzymatic activity and free energy of folding are matched. The connection between different timescales and the corresponding amplitudes of motions in adenylate kinase and their linkage to catalytic function is likely to be a general characteristic of protein energy landscapes.

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Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 942 Mendeley readers of this research output. Click here to see the associated Mendeley record.
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Geographical breakdown

Geographical breakdown
Country Count As %
United States 26 3%
United Kingdom 7 <1%
Canada 6 <1%
Germany 6 <1%
France 5 <1%
Spain 3 <1%
Norway 3 <1%
Japan 3 <1%
Argentina 2 <1%
Other 20 2%
Unknown 861 91%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Student > Ph. D. Student 249 26%
Researcher 208 22%
Student > Bachelor 69 7%
Student > Master 65 7%
Professor > Associate Professor 65 7%
Other 149 16%
Unknown 137 15%
Readers by discipline
Readers by discipline Count As %
Agricultural and Biological Sciences 231 25%
Chemistry 211 22%
Biochemistry, Genetics and Molecular Biology 166 18%
Physics and Astronomy 84 9%
Engineering 21 2%
Other 71 8%
Unknown 158 17%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 21. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 19 April 2025.
All research outputs
#1,961,341
of 28,815,917 outputs
Outputs from Nature
#44,625
of 105,767 outputs
Outputs of similar age
#6,247
of 183,727 outputs
Outputs of similar age from Nature
#122
of 546 outputs
Altmetric has tracked 28,815,917 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 93rd percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 105,767 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 99.7. This one has gotten more attention than average, scoring higher than 57% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 183,727 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 96% of its contemporaries.
We're also able to compare this research output to 546 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 77% of its contemporaries.