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Detection of ligand binding hot spots on protein surfaces via fragment-based methods: application to DJ-1 and glucocerebrosidase

Overview of attention for article published in Journal of Computer-Aided Molecular Design, June 2009
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • Among the highest-scoring outputs from this source (#42 of 1,143)
  • High Attention Score compared to outputs of the same age (94th percentile)
  • High Attention Score compared to outputs of the same age and source (94th percentile)

Mentioned by

blogs
1 blog
patent
4 patents
guideline
1 clinical guideline source

Readers on

mendeley
131 Mendeley
citeulike
3 CiteULike
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Article details
Title
Detection of ligand binding hot spots on protein surfaces via fragment-based methods: application to DJ-1 and glucocerebrosidase
Published in
Journal of Computer-Aided Molecular Design, June 2009
DOI 10.1007/s10822-009-9283-2
Pubmed ID
Authors
Abstract

The identification of hot spots, i.e., binding regions that contribute substantially to the free energy of ligand binding, is a critical step for structure-based drug design. Here we present the application of two fragment-based methods to the detection of hot spots for DJ-1 and glucocerebrosidase (GCase), targets for the development of therapeutics for Parkinson's and Gaucher's diseases, respectively. While the structures of these two proteins are known, binding information is lacking. In this study we employ the experimental multiple solvent crystal structures (MSCS) method and computational fragment mapping (FTMap) to identify regions suitable for the development of pharmacological chaperones for DJ-1 and GCase. Comparison of data derived via MSCS and FTMap also shows that FTMap, a computational method for the identification of fragment binding hot spots, is an accurate and robust alternative to the performance of expensive and difficult crystallographic experiments.

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Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 131 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Geographical breakdown
Country Count As %
United Kingdom 7 5%
Norway 2 2%
Denmark 2 2%
Germany 2 2%
United States 1 <1%
Taiwan 1 <1%
Russia 1 <1%
Serbia 1 <1%
Japan 1 <1%
Other 0 0%
Unknown 113 86%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Researcher 36 27%
Student > Ph. D. Student 30 23%
Student > Master 11 8%
Professor > Associate Professor 9 7%
Other 8 6%
Other 20 15%
Unknown 17 13%
Readers by discipline
Readers by discipline Count As %
Agricultural and Biological Sciences 37 28%
Chemistry 31 24%
Biochemistry, Genetics and Molecular Biology 15 11%
Medicine and Dentistry 7 5%
Computer Science 6 5%
Other 11 8%
Unknown 24 18%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 17. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 23 March 2021.
All research outputs
#2,673,498
of 34,054,827 outputs
Outputs from Journal of Computer-Aided Molecular Design
#42
of 1,143 outputs
Outputs of similar age
#9,622
of 173,917 outputs
Outputs of similar age from Journal of Computer-Aided Molecular Design
#1
of 18 outputs
Altmetric has tracked 34,054,827 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 92nd percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 1,143 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.4. This one has done particularly well, scoring higher than 96% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 173,917 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 94% of its contemporaries.
We're also able to compare this research output to 18 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 94% of its contemporaries.