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Building a Genome Analysis Pipeline to Predict Disease Risk and Prevent Disease

Overview of attention for article published in Journal of Molecular Biology, August 2013
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (87th percentile)
  • High Attention Score compared to outputs of the same age and source (84th percentile)

Mentioned by

blogs
1 blog
twitter
9 X users

Readers on

mendeley
138 Mendeley
citeulike
6 CiteULike
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Article details
Title
Building a Genome Analysis Pipeline to Predict Disease Risk and Prevent Disease
Published in
Journal of Molecular Biology, August 2013
DOI 10.1016/j.jmb.2013.07.038
Pubmed ID
Authors
Abstract

Reduced costs and increased speed and accuracy of sequencing can bring the genome-based evaluation of individual disease risk to the bedside. While past efforts have identified a number of actionable mutations, the bulk of genetic risk remains hidden in sequence data. The biggest challenge facing genomic medicine today is the development of new techniques to predict the specifics of a given human phenome (set of all expressed phenotypes) encoded by each individual variome (full set of genome variants) in the context of the given environment. Numerous tools exist for the computational identification of the functional effects of a single variant. However, the pipelines taking advantage of full genomic, exomic, transcriptomic (and other) sequences have only recently become a reality. This review looks at the building of methodologies for predicting "variome"-defined disease risk. It also discusses some of the challenges for incorporating such a pipeline into everyday medical practice.

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Timeline Attention over time Attention Score history
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X Demographics

X Demographics

The data shown below were collected from the profiles of 9 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 138 Mendeley readers of this research output. Click here to see the associated Mendeley record.
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Geographical breakdown

Geographical breakdown
Country Count As %
United States 6 4%
India 2 1%
United Kingdom 2 1%
Spain 2 1%
Brazil 2 1%
Japan 1 <1%
China 1 <1%
Canada 1 <1%
Unknown 121 88%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Researcher 33 24%
Student > Ph. D. Student 25 18%
Student > Master 17 12%
Professor > Associate Professor 13 9%
Student > Postgraduate 10 7%
Other 30 22%
Unknown 10 7%
Readers by discipline
Readers by discipline Count As %
Agricultural and Biological Sciences 67 49%
Biochemistry, Genetics and Molecular Biology 20 14%
Computer Science 15 11%
Medicine and Dentistry 12 9%
Engineering 4 3%
Other 8 6%
Unknown 12 9%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 12. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 23 August 2013.
All research outputs
#3,413,945
of 28,840,878 outputs
Outputs from Journal of Molecular Biology
#896
of 12,430 outputs
Outputs of similar age
#26,243
of 215,917 outputs
Outputs of similar age from Journal of Molecular Biology
#8
of 57 outputs
Altmetric has tracked 28,840,878 research outputs across all sources so far. Compared to these this one has done well and is in the 88th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 12,430 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.7. This one has done particularly well, scoring higher than 92% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 215,917 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 87% of its contemporaries.
We're also able to compare this research output to 57 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 84% of its contemporaries.