| Title |
Population Genomic Analysis Reveals a Rich Speciation and Demographic History of Orang-utans (Pongo pygmaeus and Pongo abelii)
|
|---|---|
| Published in |
PLOS ONE, October 2013
|
| DOI | 10.1371/journal.pone.0077175 |
| Pubmed ID | |
| Authors | |
| Abstract |
To gain insights into evolutionary forces that have shaped the history of Bornean and Sumatran populations of orang-utans, we compare patterns of variation across more than 11 million single nucleotide polymorphisms found by previous mitochondrial and autosomal genome sequencing of 10 wild-caught orang-utans. Our analysis of the mitochondrial data yields a far more ancient split time between the two populations (~3.4 million years ago) than estimates based on autosomal data (0.4 million years ago), suggesting a complex speciation process with moderate levels of primarily male migration. We find that the distribution of selection coefficients consistent with the observed frequency spectrum of autosomal non-synonymous polymorphisms in orang-utans is similar to the distribution in humans. Our analysis indicates that 35% of genes have evolved under detectable negative selection. Overall, our findings suggest that purifying natural selection, genetic drift, and a complex demographic history are the dominant drivers of genome evolution for the two orang-utan populations. |
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X Demographics
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| Malaysia | 1 | 9% |
| United States | 1 | 9% |
| Russia | 1 | 9% |
| Japan | 1 | 9% |
| New Zealand | 1 | 9% |
| Denmark | 1 | 9% |
| Unknown | 5 | 45% |
Demographic breakdown
| Type | Count | As % |
|---|---|---|
| Members of the public | 6 | 55% |
| Scientists | 5 | 45% |
Mendeley demographics
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| United States | 1 | 1% |
| Netherlands | 1 | 1% |
| United Kingdom | 1 | 1% |
| Germany | 1 | 1% |
| China | 1 | 1% |
| Switzerland | 1 | 1% |
| Unknown | 83 | 93% |
Demographic breakdown
| Readers by professional status | Count | As % |
|---|---|---|
| Student > Ph. D. Student | 27 | 30% |
| Student > Bachelor | 10 | 11% |
| Researcher | 10 | 11% |
| Student > Doctoral Student | 6 | 7% |
| Student > Master | 6 | 7% |
| Other | 9 | 10% |
| Unknown | 21 | 24% |
| Readers by discipline | Count | As % |
|---|---|---|
| Agricultural and Biological Sciences | 49 | 55% |
| Biochemistry, Genetics and Molecular Biology | 11 | 12% |
| Mathematics | 2 | 2% |
| Environmental Science | 1 | 1% |
| Earth and Planetary Sciences | 1 | 1% |
| Other | 2 | 2% |
| Unknown | 23 | 26% |