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Molecular Dynamics Simulations of the Cardiac Troponin Complex Performed with FRET Distances as Restraints

Overview of attention for article published in PLOS ONE, February 2014
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Article details
Title
Molecular Dynamics Simulations of the Cardiac Troponin Complex Performed with FRET Distances as Restraints
Published in
PLOS ONE, February 2014
DOI 10.1371/journal.pone.0087135
Pubmed ID
Authors
Abstract

Cardiac troponin (cTn) is the Ca(2+)-sensitive molecular switch that controls cardiac muscle activation and relaxation. However, the molecular detail of the switching mechanism and how the Ca(2+) signal received at cardiac troponin C (cTnC) is communicated to cardiac troponin I (cTnI) are still elusive. To unravel the structural details of troponin switching, we performed ensemble Förster resonance energy transfer (FRET) measurements and molecular dynamic (MD) simulations of the cardiac troponin core domain complex. The distance distributions of forty five inter-residue pairs were obtained under Ca(2+)-free and saturating Ca(2+) conditions from time-resolved FRET measurements. These distances were incorporated as restraints during the MD simulations of the cardiac troponin core domain. Compared to the Ca(2+)-saturated structure, the absence of regulatory Ca(2+) perturbed the cTnC N-domain hydrophobic pocket which assumed a closed conformation. This event partially unfolded the cTnI regulatory region/switch. The absence of Ca(2+), induced flexibility to the D/E linker and the cTnI inhibitory region, and rotated the cTnC N-domain with respect to rest of the troponin core domain. In the presence of saturating Ca(2+) the above said phenomenon were absent. We postulate that the secondary structure perturbations experienced by the cTnI regulatory region held within the cTnC N-domain hydrophobic pocket, coupled with the rotation of the cTnC N-domain would control the cTnI mobile domain interaction with actin. Concomitantly the rotation of the cTnC N-domain and perturbation of the D/E linker rigidity would control the cTnI inhibitory region interaction with actin to effect muscle relaxation.

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The data shown below were compiled from readership statistics for 31 Mendeley readers of this research output. Click here to see the associated Mendeley record.
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Geographical breakdown

Geographical breakdown
Country Count As %
United Kingdom 1 3%
Unknown 30 97%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Researcher 6 19%
Student > Ph. D. Student 5 16%
Professor > Associate Professor 4 13%
Student > Doctoral Student 3 10%
Student > Postgraduate 3 10%
Other 7 23%
Unknown 3 10%
Readers by discipline
Readers by discipline Count As %
Chemistry 10 32%
Biochemistry, Genetics and Molecular Biology 7 23%
Agricultural and Biological Sciences 6 19%
Physics and Astronomy 2 6%
Medicine and Dentistry 2 6%
Other 1 3%
Unknown 3 10%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 26 February 2014.
All research outputs
#27,725,202
of 34,359,530 outputs
Outputs from PLOS ONE
#176,878
of 224,516 outputs
Outputs of similar age
#205,686
of 269,575 outputs
Outputs of similar age from PLOS ONE
#4,901
of 6,169 outputs
Altmetric has tracked 34,359,530 research outputs across all sources so far. This one is in the 16th percentile – i.e., 16% of other outputs scored the same or lower than it.
So far Altmetric has tracked 224,516 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 17.2. This one is in the 18th percentile – i.e., 18% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 269,575 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 21st percentile – i.e., 21% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 6,169 others from the same source and published within six weeks on either side of this one. This one is in the 17th percentile – i.e., 17% of its contemporaries scored the same or lower than it.