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DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins

Overview of attention for article published in Nucleic Acids Research, May 2017
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  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (80th percentile)
  • Good Attention Score compared to outputs of the same age and source (76th percentile)

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3 X users
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4 patents
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1 Redditor

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119 Mendeley
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2 CiteULike
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Article details
Title
DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins
Published in
Nucleic Acids Research, May 2017
DOI 10.1093/nar/gkx390
Pubmed ID
Authors
Abstract

High-throughput sequencing methods are generating enormous amounts of genomic data, giving unprecedented insights into human genetic variation and its relation to disease. An individual human genome contains millions of Single Nucleotide Variants: to discriminate the deleterious from the benign ones, a variety of methods have been developed that predict whether a protein-coding variant likely affects the carrier individual's health. We present such a method, DEOGEN2, which incorporates heterogeneous information about the molecular effects of the variants, the domains involved, the relevance of the gene and the interactions in which it participates. This extensive contextual information is non-linearly mapped into one single deleteriousness score for each variant. Since for the non-expert user it is sometimes still difficult to assess what this score means, how it relates to the encoded protein, and where it originates from, we developed an interactive online framework (http://deogen2.mutaframe.com/) to better present the DEOGEN2 deleteriousness predictions of all possible variants in all human proteins. The prediction is visualized so both expert and non-expert users can gain insights into the meaning, protein context and origins of each prediction.

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X Demographics

The data shown below were collected from the profiles of 3 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 119 Mendeley readers of this research output. Click here to see the associated Mendeley record.
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Geographical breakdown

Geographical breakdown
Country Count As %
Unknown 119 100%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Student > Ph. D. Student 19 16%
Researcher 19 16%
Student > Bachelor 12 10%
Student > Master 10 8%
Other 5 4%
Other 17 14%
Unknown 37 31%
Readers by discipline
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 41 34%
Agricultural and Biological Sciences 12 10%
Computer Science 9 8%
Mathematics 3 3%
Medicine and Dentistry 3 3%
Other 10 8%
Unknown 41 34%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 10. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 04 August 2026.
All research outputs
#4,701,688
of 31,660,612 outputs
Outputs from Nucleic Acids Research
#7,025
of 32,228 outputs
Outputs of similar age
#65,726
of 343,302 outputs
Outputs of similar age from Nucleic Acids Research
#67
of 290 outputs
Altmetric has tracked 31,660,612 research outputs across all sources so far. Compared to these this one has done well and is in the 85th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 32,228 research outputs from this source. They typically receive more attention than average, with a mean Attention Score of 7.8. This one has done well, scoring higher than 78% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 343,302 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 80% of its contemporaries.
We're also able to compare this research output to 290 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 76% of its contemporaries.