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Algorithms in Bioinformatics

Overview of attention for book
Cover of 'Algorithms in Bioinformatics'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Minimum Factorization Agreement of Spliced ESTs
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    Chapter 2 Annotating Fragmentation Patterns
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    Chapter 3 biRNA: Fast RNA-RNA Binding Sites Prediction
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    Chapter 4 Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks
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    Chapter 5 PMFastR: A New Approach to Multiple RNA Structure Alignment
  7. Altmetric Badge
    Chapter 6 On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices
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    Chapter 7 Constructing Majority-Rule Supertrees
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    Chapter 8 SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy
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    Chapter 9 A Simple, Practical and Complete $O(\frac{n^3}{ \log n})$ -Time Algorithm for RNA Folding Using the Four-Russians Speedup
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    Chapter 10 Back-Translation for Discovering Distant Protein Homologies
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    Chapter 11 A Markov Classification Model for Metabolic Pathways
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    Chapter 12 Mimosa: Mixture Model of Co-expression to Detect Modulators of Regulatory Interaction
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    Chapter 13 Phylogenetic Comparative Assembly
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    Chapter 14 K-Partite RNA Secondary Structures
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    Chapter 15 Efficient Algorithms for Analyzing Segmental Duplications, Deletions, and Inversions in Genomes
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    Chapter 16 Predicting Gene Structures from Multiple RT-PCR Tests
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    Chapter 17 A Tree Based Method for the Rapid Screening of Chemical Fingerprints
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    Chapter 18 Generalizing the Four Gamete Condition and Splits Equivalence Theorem: Perfect Phylogeny on Three State Characters
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    Chapter 19 Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes
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    Chapter 20 A General Framework for Local Pairwise Alignment Statistics with Gaps
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    Chapter 21 mpscan: Fast Localisation of Multiple Reads in Genomes
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    Chapter 22 Fast Prediction of RNA-RNA Interaction
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    Chapter 23 FlexSnap: Flexible Non-sequential Protein Structure Alignment
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    Chapter 24 A Non-parametric Bayesian Approach for Predicting RNA Secondary Structures
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    Chapter 25 Exact Score Distribution Computation for Similarity Searches in Ontologies
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    Chapter 26 Linear-Time Protein 3-D Structure Searching with Insertions and Deletions
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    Chapter 27 Visualizing Phylogenetic Treespace Using Cartographic Projections
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    Chapter 28 A Simulation Study Comparing Supertree and Combined Analysis Methods Using SMIDGen
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    Chapter 29 Aligning Biomolecular Networks Using Modular Graph Kernels
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    Chapter 30 MADMX: A Novel Strategy for Maximal Dense Motif Extraction
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    Chapter 31 Large-Scale Neighbor-Joining with NINJA
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    Chapter 32 A Unifying View on Approximation and FPT of Agreement Forests
  34. Altmetric Badge
    Chapter 33 Structural Alignment of RNA with Complex Pseudoknot Structure
  35. Altmetric Badge
    Chapter 34 Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models
Attention for Chapter 21: mpscan: Fast Localisation of Multiple Reads in Genomes
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (83rd percentile)
  • High Attention Score compared to outputs of the same age and source (87th percentile)

Mentioned by

patent
32 patents

Readers on

mendeley
16 Mendeley
citeulike
3 CiteULike
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Article details
Chapter title
mpscan: Fast Localisation of Multiple Reads in Genomes
Chapter number 21
Book title
Algorithms in Bioinformatics
Published in
ADS, September 2009
DOI 10.1007/978-3-642-04241-6_21
Book ISBNs
978-3-64-204240-9, 978-3-64-204241-6
Authors

Eric Rivals, Leena Salmela, Petteri Kiiskinen, Petri Kalsi, Jorma Tarhio, Rivals, Eric, Salmela, Leena, Kiiskinen, Petteri, Kalsi, Petri, Tarhio, Jorma

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Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 16 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Geographical breakdown
Country Count As %
United States 1 6%
France 1 6%
Argentina 1 6%
Unknown 13 81%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Student > Ph. D. Student 5 31%
Researcher 3 19%
Other 1 6%
Student > Bachelor 1 6%
Professor 1 6%
Other 2 13%
Unknown 3 19%
Readers by discipline
Readers by discipline Count As %
Computer Science 6 38%
Agricultural and Biological Sciences 4 25%
Biochemistry, Genetics and Molecular Biology 2 13%
Social Sciences 1 6%
Medicine and Dentistry 1 6%
Other 0 0%
Unknown 2 13%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 9. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 21 July 2026.
All research outputs
#4,699,124
of 31,591,940 outputs
Outputs from ADS
#2,366
of 25,283 outputs
Outputs of similar age
#16,972
of 131,268 outputs
Outputs of similar age from ADS
#52
of 519 outputs
Altmetric has tracked 31,591,940 research outputs across all sources so far. Compared to these this one has done well and is in the 83rd percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 25,283 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.4. This one has done well, scoring higher than 89% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 131,268 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 83% of its contemporaries.
We're also able to compare this research output to 519 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 87% of its contemporaries.