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XQTav: an XQuery processor for Taverna environment

Overview of attention for article published in Bioinformatics, March 2006
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Article details
Title
XQTav: an XQuery processor for Taverna environment
Published in
Bioinformatics, March 2006
DOI 10.1093/bioinformatics/btl101
Pubmed ID
Authors
Abstract

Taverna workbench is an environment for construction, visualization and execution of bioinformatic workflows that integrate specialized tools available through the internet. It is gaining popularity fast, because of supporting the most important bioinformatic services and its simple, yet robust graphical notation. Here we present XQTav-an extension of Taverna that provides full integration with XQuery (the query language for XML) engine. XQTav allows execution of XQuery scripts in Taverna workflow diagrams. All existing Taverna processors can be accessed in the XQuery scripts. This provides an alternative way of specifying subworkflows in Taverna and is useful when one deals with query-like algorithms (e.g. filters and inner joins). Moreover, XQtav may be used to automatically generate an XQuery script that is equivalent to Taverna's workflow. This constitutes another way of creating and enacting bioinformatic workflows: overall structure of a diagram is drawn in Taverna environment, XQuery code is generated and possibly adjusted by hand. It can be executed by XQuery engines or incorporated into other software environments.

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Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 14 Mendeley readers of this research output. Click here to see the associated Mendeley record.
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Geographical breakdown

Geographical breakdown
Country Count As %
Sweden 1 7%
United Kingdom 1 7%
Germany 1 7%
Unknown 11 79%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Researcher 5 36%
Professor 4 29%
Student > Master 2 14%
Student > Bachelor 1 7%
Professor > Associate Professor 1 7%
Other 1 7%
Readers by discipline
Readers by discipline Count As %
Agricultural and Biological Sciences 6 43%
Computer Science 5 36%
Medicine and Dentistry 3 21%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 3. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 25 November 2025.
All research outputs
#8,534,528
of 25,373,627 outputs
Outputs from Bioinformatics
#6,956
of 12,808 outputs
Outputs of similar age
#29,437
of 85,978 outputs
Outputs of similar age from Bioinformatics
#24
of 50 outputs
Altmetric has tracked 25,373,627 research outputs across all sources so far. This one is in the 43rd percentile – i.e., 43% of other outputs scored the same or lower than it.
So far Altmetric has tracked 12,808 research outputs from this source. They typically receive more attention than average, with a mean Attention Score of 8.0. This one is in the 34th percentile – i.e., 34% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 85,978 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 13th percentile – i.e., 13% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 50 others from the same source and published within six weeks on either side of this one. This one is in the 16th percentile – i.e., 16% of its contemporaries scored the same or lower than it.