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Homozygosity mapping with SNP arrays identifies TRIM32, an E3 ubiquitin ligase, as a Bardet–Biedl syndrome gene (BBS11)

Overview of attention for article published in Proceedings of the National Academy of Sciences of the United States of America, April 2006
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  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (81st percentile)
  • Above-average Attention Score compared to outputs of the same age and source (61st percentile)

Mentioned by

patent
2 patents
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5 Wikipedia pages

Readers on

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161 Mendeley
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1 CiteULike
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Article details
Title
Homozygosity mapping with SNP arrays identifies TRIM32, an E3 ubiquitin ligase, as a Bardet–Biedl syndrome gene (BBS11)
Published in
Proceedings of the National Academy of Sciences of the United States of America, April 2006
DOI 10.1073/pnas.0600158103
Pubmed ID
Authors
Abstract

The identification of mutations in genes that cause human diseases has largely been accomplished through the use of positional cloning, which relies on linkage mapping. In studies of rare diseases, the resolution of linkage mapping is limited by the number of available meioses and informative marker density. One recent advance is the development of high-density SNP microarrays for genotyping. The SNP arrays overcome low marker informativity by using a large number of markers to achieve greater coverage at finer resolution. We used SNP microarray genotyping for homozygosity mapping in a small consanguineous Israeli Bedouin family with autosomal recessive Bardet-Biedl syndrome (BBS; obesity, pigmentary retinopathy, polydactyly, hypogonadism, renal and cardiac abnormalities, and cognitive impairment) in which previous linkage studies using short tandem repeat polymorphisms failed to identify a disease locus. SNP genotyping revealed a homozygous candidate region. Mutation analysis in the region of homozygosity identified a conserved homozygous missense mutation in the TRIM32 gene, a gene coding for an E3 ubiquitin ligase. Functional analysis of this gene in zebrafish and expression correlation analyses among other BBS genes in an expression quantitative trait loci data set demonstrate that TRIM32 is a BBS gene. This study shows the value of high-density SNP genotyping for homozygosity mapping and the use of expression correlation data for evaluation of candidate genes and identifies the proteasome degradation pathway as a pathway involved in BBS.

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Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 161 Mendeley readers of this research output. Click here to see the associated Mendeley record.
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Geographical breakdown

Geographical breakdown
Country Count As %
United States 2 1%
Tunisia 1 <1%
Norway 1 <1%
United Kingdom 1 <1%
Chile 1 <1%
Canada 1 <1%
Brazil 1 <1%
Unknown 153 95%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Student > Ph. D. Student 40 25%
Researcher 34 21%
Student > Master 18 11%
Student > Doctoral Student 10 6%
Student > Postgraduate 8 5%
Other 28 17%
Unknown 23 14%
Readers by discipline
Readers by discipline Count As %
Agricultural and Biological Sciences 64 40%
Biochemistry, Genetics and Molecular Biology 39 24%
Medicine and Dentistry 20 12%
Neuroscience 5 3%
Mathematics 4 2%
Other 5 3%
Unknown 24 15%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 9. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 13 March 2024.
All research outputs
#5,140,676
of 34,361,833 outputs
Outputs from Proceedings of the National Academy of Sciences of the United States of America
#48,573
of 118,929 outputs
Outputs of similar age
#15,929
of 124,970 outputs
Outputs of similar age from Proceedings of the National Academy of Sciences of the United States of America
#195
of 630 outputs
Altmetric has tracked 34,361,833 research outputs across all sources so far. Compared to these this one has done well and is in the 83rd percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 118,929 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 40.1. This one has gotten more attention than average, scoring higher than 52% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 124,970 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 81% of its contemporaries.
We're also able to compare this research output to 630 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 61% of its contemporaries.