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Modelling proton tunnelling in the adenine–thymine base pair

Overview of attention for article published in Physical Chemistry Chemical Physics (PCCP), January 2015
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About this Attention Score

  • In the top 5% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (95th percentile)
  • High Attention Score compared to outputs of the same age and source (99th percentile)

Mentioned by

news
1 news outlet
twitter
16 X users
wikipedia
2 Wikipedia pages
q&a
1 Q&A thread
podcasts
1 podcast

Readers on

mendeley
82 Mendeley
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Article details
Title
Modelling proton tunnelling in the adenine–thymine base pair
Published in
Physical Chemistry Chemical Physics (PCCP), January 2015
DOI 10.1039/c5cp00472a
Pubmed ID
Authors
Abstract

The energies of the canonical (standard, amino-keto) and tautomeric (non-standard, imino-enol) charge-neutral forms of the adenine-thymine base pair (A-T and A*-T*, respectively) are calculated using density functional theory. The reaction pathway is then computed using a transition state search to provide the asymmetric double-well potential minima along with the barrier height and shape, which are combined to create the potential energy surface using a polynomial fit. The influence of quantum tunnelling on proton transfer within a base pair H-bond (modelled as the DFT deduced double-well potential) is then investigated by solving the time-dependent master equation for the density matrix. The effect on a quantum system by its surrounding water molecules is explored via the inclusion of a dissipative Lindblad term in the master equation, in which the environment is modelled as a heat bath of harmonic oscillators. It is found that quantum tunnelling, due to transitions to higher energy eigenstates with significant amplitudes in the shallow (tautomeric) side of the potential, is unlikely to be a significant mechanism for the creation of adenine-thymine tautomers within DNA, with thermally assisted coupling of the environment only able to boost the tunnelling probability to a maximum of 2 × 10(-9). This is barely increased for different choices of the starting wave function or when the geometry of the potential energy surface is varied.

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X Demographics

X Demographics

The data shown below were collected from the profiles of 16 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 82 Mendeley readers of this research output. Click here to see the associated Mendeley record.
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Geographical breakdown

Geographical breakdown
Country Count As %
United Kingdom 1 1%
Unknown 81 99%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Student > Ph. D. Student 15 18%
Student > Bachelor 10 12%
Researcher 10 12%
Student > Master 7 9%
Professor > Associate Professor 6 7%
Other 16 20%
Unknown 18 22%
Readers by discipline
Readers by discipline Count As %
Chemistry 21 26%
Physics and Astronomy 18 22%
Biochemistry, Genetics and Molecular Biology 9 11%
Agricultural and Biological Sciences 3 4%
Medicine and Dentistry 3 4%
Other 9 11%
Unknown 19 23%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 32. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 15 August 2026.
All research outputs
#1,554,208
of 34,360,257 outputs
Outputs from Physical Chemistry Chemical Physics (PCCP)
#89
of 21,030 outputs
Outputs of similar age
#16,790
of 409,684 outputs
Outputs of similar age from Physical Chemistry Chemical Physics (PCCP)
#9
of 1,033 outputs
Altmetric has tracked 34,360,257 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 95th percentile: it's in the top 5% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 21,030 research outputs from this source. They receive a mean Attention Score of 2.8. This one has done particularly well, scoring higher than 99% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 409,684 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 95% of its contemporaries.
We're also able to compare this research output to 1,033 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 99% of its contemporaries.