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The impact of low-frequency and rare variants on lipid levels

Overview of attention for article published in Nature Genetics, May 2015
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  • In the top 5% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (95th percentile)
  • Above-average Attention Score compared to outputs of the same age and source (57th percentile)

Mentioned by

news
2 news outlets
policy
1 policy source
twitter
33 X users
patent
4 patents
facebook
2 Facebook pages
googleplus
1 Google+ user
video
1 YouTube creator

Readers on

mendeley
325 Mendeley
citeulike
6 CiteULike
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Article details
Title
The impact of low-frequency and rare variants on lipid levels
Published in
Nature Genetics, May 2015
DOI 10.1038/ng.3300
Pubmed ID
Authors

Ida Surakka, Momoko Horikoshi, Reedik Mägi, Antti-Pekka Sarin, Anubha Mahajan, Vasiliki Lagou, Letizia Marullo, Teresa Ferreira, Benjamin Miraglio, Sanna Timonen, Johannes Kettunen, Matti Pirinen, Juha Karjalainen, Gudmar Thorleifsson, Sara Hägg, Jouke-Jan Hottenga, Aaron Isaacs, Claes Ladenvall, Marian Beekman, Tõnu Esko, Janina S Ried, Christopher P Nelson, Christina Willenborg, Stefan Gustafsson, Harm-Jan Westra, Matthew Blades, Anton J M de Craen, Eco J de Geus, Joris Deelen, Harald Grallert, Anders Hamsten, Aki S Havulinna, Christian Hengstenberg, Jeanine J Houwing-Duistermaat, Elina Hyppönen, Lennart C Karssen, Terho Lehtimäki, Valeriya Lyssenko, Patrik K E Magnusson, Evelin Mihailov, Martina Müller-Nurasyid, John-Patrick Mpindi, Nancy L Pedersen, Brenda W J H Penninx, Markus Perola, Tune H Pers, Annette Peters, Johan Rung, Johannes H Smit, Valgerdur Steinthorsdottir, Martin D Tobin, Natalia Tsernikova, Elisabeth M van Leeuwen, Jorma S Viikari, Sara M Willems, Gonneke Willemsen, Heribert Schunkert, Jeanette Erdmann, Nilesh J Samani, Jaakko Kaprio, Lars Lind, Christian Gieger, Andres Metspalu, P Eline Slagboom, Leif Groop, Cornelia M van Duijn, Johan G Eriksson, Antti Jula, Veikko Salomaa, Dorret I Boomsma, Christine Power, Olli T Raitakari, Erik Ingelsson, Marjo-Riitta Järvelin, Unnur Thorsteinsdottir, Lude Franke, Elina Ikonen, Olli Kallioniemi, Vilja Pietiäinen, Cecilia M Lindgren, Kari Stefansson, Aarno Palotie, Mark I McCarthy, Andrew P Morris, Inga Prokopenko, Samuli Ripatti

Abstract

Using a genome-wide screen of 9.6 million genetic variants achieved through 1000 Genomes Project imputation in 62,166 samples, we identify association to lipid traits in 93 loci, including 79 previously identified loci with new lead SNPs and 10 new loci, 15 loci with a low-frequency lead SNP and 10 loci with a missense lead SNP, and 2 loci with an accumulation of rare variants. In six loci, SNPs with established function in lipid genetics (CELSR2, GCKR, LIPC and APOE) or candidate missense mutations with predicted damaging function (CD300LG and TM6SF2) explained the locus associations. The low-frequency variants increased the proportion of variance explained, particularly for low-density lipoprotein cholesterol and total cholesterol. Altogether, our results highlight the impact of low-frequency variants in complex traits and show that imputation offers a cost-effective alternative to resequencing.

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X Demographics

X Demographics

The data shown below were collected from the profiles of 33 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 325 Mendeley readers of this research output. Click here to see the associated Mendeley record.
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Geographical breakdown

Geographical breakdown
Country Count As %
United States 6 2%
United Kingdom 3 <1%
Ukraine 1 <1%
Netherlands 1 <1%
France 1 <1%
Finland 1 <1%
Spain 1 <1%
Germany 1 <1%
Canada 1 <1%
Other 0 0%
Unknown 309 95%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Researcher 84 26%
Student > Ph. D. Student 72 22%
Student > Master 29 9%
Student > Bachelor 23 7%
Other 18 6%
Other 60 18%
Unknown 39 12%
Readers by discipline
Readers by discipline Count As %
Agricultural and Biological Sciences 97 30%
Biochemistry, Genetics and Molecular Biology 74 23%
Medicine and Dentistry 61 19%
Computer Science 8 2%
Pharmacology, Toxicology and Pharmaceutical Science 5 2%
Other 28 9%
Unknown 52 16%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 41. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 27 August 2024.
All research outputs
#1,265,932
of 33,779,198 outputs
Outputs from Nature Genetics
#2,056
of 8,677 outputs
Outputs of similar age
#12,587
of 304,721 outputs
Outputs of similar age from Nature Genetics
#38
of 89 outputs
Altmetric has tracked 33,779,198 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 96th percentile: it's in the top 5% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 8,677 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 44.3. This one has done well, scoring higher than 76% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 304,721 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 95% of its contemporaries.
We're also able to compare this research output to 89 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 57% of its contemporaries.