| Title |
Copy number variant analysis from exome data in 349 patients with epileptic encephalopathy
|
|---|---|
| Published in |
Annals of Neurology, July 2015
|
| DOI | 10.1002/ana.24457 |
| Pubmed ID | |
| Authors |
Andrew S. Allen, Samuel F. Berkovic, Bradley P. Coe, Joseph Cook, Patrick Cossette, Norman Delanty, Dennis Dlugos, Evan E. Eichler, Michael P. Epstein, Tracy Glauser, David B. Goldstein, Erin L. Heinzen, Michael R. Johnson, Nik Krumm, Ruben Kuzniecky, Daniel H. Lowenstein, Anthony G. Marson, Heather C. Mefford, Ben Nelson, Sahar Esmaeeli Nieh, Terence J. O'Brien, Ruth Ottman, Stephen Petrou, Slavé Petrovski, Annapurna Poduri, Archana Raja, Elizabeth K. Ruzzo, Ingrid E. Scheffer, Elliott Sherr, Bassel Abou‐Khalil, Brian K. Alldredge, Eva Andermann, Frederick Andermann, Dina Amron, Jocelyn F. Bautista, Samuel F. Berkovic, Alex Boro, Gregory Cascino, Damian Consalvo, Patricia Crumrine, Orrin Devinsky, Dennis Dlugos, Michael P. Epstein, Miguel Fiol, Nathan B. Fountain, Jacqueline French, Daniel Friedman, Eric B. Geller, Tracy Glauser, Simon Glynn, Sheryl R. Haut, Jean Hayward, Sandra L. Helmers, Sucheta Joshi, Andres Kanner, Heidi E. Kirsch, Robert C. Knowlton, Eric H. Kossoff, Rachel Kuperman, Ruben Kuzniecky, Daniel H. Lowenstein, Shannon M. McGuire, Paul V. Motika, Edward J. Novotny, Ruth Ottman, Juliann M. Paolicchi, Jack Parent, Kristen Park, Annapurna Poduri, Ingrid E. Scheffer, Renée A. Shellhaas, Elliott Sherr, Jerry J. Shih, Rani Singh, Joseph Sirven, Michael C. Smith, Joe Sullivan, Liu Lin Thio, Anu Venkat, Eileen P.G. Vining, Gretchen K. Von Allmen, Judith L. Weisenberg, Peter Widdess‐Walsh, Melodie R. Winawer |
| Abstract |
Infantile spasms (IS) and Lennox Gastaut syndrome (LGS) are epileptic encephalopathies characterized by early-onset, intractable seizures and poor developmental outcomes. De novo sequence mutations and copy number variants (CNVs) are causative in a subset of cases. We used exome sequence data in 349 trios with IS or LGS to identify putative de novo CNVs. We confirm 18 de novo CNVs in 17 patients (4.8%), 10 of which are likely pathogenic, giving a firm genetic diagnosis for 2.9% of patients. Confirmation of exome-predicted CNVs by array-based methods is still required due to false positive rates of prediction algorithms. Our exome-based results are consistent with recent array-based studies in similar cohorts and highlight novel candidate genes for IS and LGS. This article is protected by copyright. All rights reserved. |
Login to access the Attention Digest and the Sentiment Analysis related to this output.
X Demographics
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| Argentina | 1 | 50% |
| Unknown | 1 | 50% |
Demographic breakdown
| Type | Count | As % |
|---|---|---|
| Members of the public | 1 | 50% |
| Scientists | 1 | 50% |
Mendeley demographics
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| Luxembourg | 1 | 1% |
| Ethiopia | 1 | 1% |
| Unknown | 88 | 98% |
Demographic breakdown
| Readers by professional status | Count | As % |
|---|---|---|
| Researcher | 17 | 19% |
| Student > Ph. D. Student | 11 | 12% |
| Student > Master | 11 | 12% |
| Other | 7 | 8% |
| Student > Bachelor | 7 | 8% |
| Other | 20 | 22% |
| Unknown | 17 | 19% |
| Readers by discipline | Count | As % |
|---|---|---|
| Medicine and Dentistry | 31 | 34% |
| Biochemistry, Genetics and Molecular Biology | 15 | 17% |
| Agricultural and Biological Sciences | 10 | 11% |
| Neuroscience | 6 | 7% |
| Psychology | 3 | 3% |
| Other | 4 | 4% |
| Unknown | 21 | 23% |