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Pedican: an online gene resource for pediatric cancers with literature evidence

Overview of attention for article published in Scientific Reports, June 2015
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Article details
Title
Pedican: an online gene resource for pediatric cancers with literature evidence
Published in
Scientific Reports, June 2015
DOI 10.1038/srep11435
Pubmed ID
Authors
Abstract

Pediatric cancer (PC), that is cancer occurring in children, is the leading cause of death among children worldwide, with an incidence of 175,000 per year. Elucidating the genetic abnormalities and underlying cellular mechanisms may provide less toxic curative treatments. Therefore, it is important to understand the pathology of pediatric cancer at the genetic, genomic and epigenetic level. To unveil the cellular complexity of PC, we have developed a database of pediatric cancers (Pedican), the first literature-based pediatric gene data resource by comprehensive literature curation and data integration. In the current release, Pedican contains 735 human genes, 88 gene fusion and 24 chromosome abnormal events curated from 2245 PubMed abstracts. Pedican provides detailed annotations for each gene, such as Entrez gene information, involved pathways, protein-protein interactions, mutations, gene expression, methylation sites, TF regulation, and post-translational modification. Additionally Pedican has a user-friendly web interface, which allows sophisticated text query, sequence searches, and browsing by highlighted literature evidence and hundreds of cancer types. Overall, our curated pediatric cancer-related gene list maps the genomic and cellular landscape for various pediatric cancers, providing a valuable resource for further experiment design. The Pedican is available at http://pedican.bioinfo-minzhao.org/.

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Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 38 Mendeley readers of this research output. Click here to see the associated Mendeley record.
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Geographical breakdown

Geographical breakdown
Country Count As %
Portugal 1 3%
Mexico 1 3%
Unknown 36 95%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Researcher 10 26%
Student > Ph. D. Student 7 18%
Student > Doctoral Student 4 11%
Student > Bachelor 3 8%
Student > Master 3 8%
Other 3 8%
Unknown 8 21%
Readers by discipline
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 10 26%
Agricultural and Biological Sciences 8 21%
Medicine and Dentistry 4 11%
Computer Science 2 5%
Nursing and Health Professions 1 3%
Other 2 5%
Unknown 11 29%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 16 June 2015.
All research outputs
#17,763,547
of 22,813,792 outputs
Outputs from Scientific Reports
#86,937
of 123,141 outputs
Outputs of similar age
#177,507
of 264,259 outputs
Outputs of similar age from Scientific Reports
#1,347
of 1,942 outputs
Altmetric has tracked 22,813,792 research outputs across all sources so far. This one is in the 19th percentile – i.e., 19% of other outputs scored the same or lower than it.
So far Altmetric has tracked 123,141 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 18.2. This one is in the 24th percentile – i.e., 24% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 264,259 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 28th percentile – i.e., 28% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 1,942 others from the same source and published within six weeks on either side of this one. This one is in the 26th percentile – i.e., 26% of its contemporaries scored the same or lower than it.