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Substrate and pH-Dependent Kinetic Profile of 3‑Mercaptopropionate Dioxygenase from Pseudomonas aeruginosa

Overview of attention for article published in Biochemistry, February 2016
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Article details
Title
Substrate and pH-Dependent Kinetic Profile of 3‑Mercaptopropionate Dioxygenase from Pseudomonas aeruginosa
Published in
Biochemistry, February 2016
DOI 10.1021/acs.biochem.5b01203
Pubmed ID
Authors
Abstract

Thiol dioxygenases catalyze the synthesis of sulfinic acids in a range of organisms from bacteria to mammals. A thiol dioxygenase from the bacterium Pseudomonas aeruginosa oxidizes both 3-mercaptopropionic acid and cysteine, with a ~70 fold preference for 3-mercaptopropionic acid over all pHs. This substrate reactivity is widened compared to other thiol dioxygenases and was exploited in this investigation of the residues important for activity. A simple model incorporating two protonation events was used to fit profiles of the Michaelis-Menten parameters determined at different pH for both substrates. The pKs determined using plots of kcat/Km differ at low pH, but not in a way easily attributable to protonation of the substrate alone and share a common pK at higher pH. Plots of kcat versus pH are also quite different at low pH showing the mono-protonated ES complexes with 3-mercaptopropionic acid and cysteine have different pKs. At higher pH, kcat decreases sigmoidally with a similar pK regardless of substrate. Loss of reactivity at high pH is attributed to deprotonation of tyrosine 159 and its influence on dioxygen binding. A mechanism is proposed by which deprotonation of tyrosine 159 both blocks oxygen binding and concomitantly promotes cystine formation. Finally, the role of tyrosine 159 was further probed by production of a G95C variant that is able to form a cysteine-tyrosine crosslink homologous to that found in mammalian cysteine dioxygenases. Activity of this variant is severely impaired. Crystallography shows that when uncrosslinked, the cysteine thiol excludes tyrosine 159 from its native position, while kinetic analysis shows that the thioether bond impairs reactivity of the crosslinked form.

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Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 19 Mendeley readers of this research output. Click here to see the associated Mendeley record.
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Geographical breakdown

Geographical breakdown
Country Count As %
Unknown 19 100%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Student > Bachelor 4 21%
Student > Ph. D. Student 3 16%
Student > Doctoral Student 2 11%
Student > Master 2 11%
Lecturer > Senior Lecturer 1 5%
Other 4 21%
Unknown 3 16%
Readers by discipline
Readers by discipline Count As %
Chemistry 8 42%
Biochemistry, Genetics and Molecular Biology 6 32%
Chemical Engineering 1 5%
Immunology and Microbiology 1 5%
Unknown 3 16%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 16 February 2016.
All research outputs
#16,584,772
of 24,397,600 outputs
Outputs from Biochemistry
#19,526
of 22,293 outputs
Outputs of similar age
#182,081
of 303,398 outputs
Outputs of similar age from Biochemistry
#70
of 143 outputs
Altmetric has tracked 24,397,600 research outputs across all sources so far. This one is in the 21st percentile – i.e., 21% of other outputs scored the same or lower than it.
So far Altmetric has tracked 22,293 research outputs from this source. They receive a mean Attention Score of 4.3. This one is in the 8th percentile – i.e., 8% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 303,398 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 31st percentile – i.e., 31% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 143 others from the same source and published within six weeks on either side of this one. This one is in the 45th percentile – i.e., 45% of its contemporaries scored the same or lower than it.