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Nascent-Seq Indicates Widespread Cotranscriptional RNA Editing in Drosophila

Overview of attention for article published in Molecular Cell, May 2012
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  • In the top 25% of all research outputs scored by Altmetric
  • Good Attention Score compared to outputs of the same age (79th percentile)
  • Above-average Attention Score compared to outputs of the same age and source (54th percentile)

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8 X users
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222 Mendeley
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1 CiteULike
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Article details
Title
Nascent-Seq Indicates Widespread Cotranscriptional RNA Editing in Drosophila
Published in
Molecular Cell, May 2012
DOI 10.1016/j.molcel.2012.05.002
Pubmed ID
Authors
Abstract

The RNA editing enzyme ADAR chemically modifies adenosine (A) to inosine (I), which is interpreted by the ribosome as a guanosine. Here we assess cotranscriptional A-to-I editing in Drosophila by isolating nascent RNA from adult fly heads and subjecting samples to high throughput sequencing. There are a large number of edited sites within nascent exons. Nascent RNA from an ADAR-null strain was also sequenced, indicating that almost all A-to-I events require ADAR. Moreover, mRNA editing levels correlate with editing levels within the cognate nascent RNA sequence, indicating that the extent of editing is set cotranscriptionally. Surprisingly, the nascent data also identify an excess of intronic over exonic editing sites. These intronic sites occur preferentially within introns that are poorly spliced cotranscriptionally, suggesting a link between editing and splicing. We conclude that ADAR-mediated editing is more widespread than previously indicated and largely occurs cotranscriptionally.

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X Demographics

X Demographics

The data shown below were collected from the profiles of 8 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 222 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Geographical breakdown
Country Count As %
United States 5 2%
Spain 2 <1%
Russia 1 <1%
Portugal 1 <1%
Japan 1 <1%
Hong Kong 1 <1%
United Kingdom 1 <1%
France 1 <1%
Czechia 1 <1%
Other 2 <1%
Unknown 206 93%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Researcher 56 25%
Student > Ph. D. Student 49 22%
Student > Bachelor 23 10%
Professor > Associate Professor 16 7%
Student > Doctoral Student 14 6%
Other 35 16%
Unknown 29 13%
Readers by discipline
Readers by discipline Count As %
Agricultural and Biological Sciences 118 53%
Biochemistry, Genetics and Molecular Biology 53 24%
Computer Science 4 2%
Medicine and Dentistry 4 2%
Neuroscience 3 1%
Other 9 4%
Unknown 31 14%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 7. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 25 January 2018.
All research outputs
#7,067,355
of 34,089,221 outputs
Outputs from Molecular Cell
#4,987
of 8,722 outputs
Outputs of similar age
#44,160
of 215,010 outputs
Outputs of similar age from Molecular Cell
#43
of 99 outputs
Altmetric has tracked 34,089,221 research outputs across all sources so far. Compared to these this one has done well and is in the 79th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 8,722 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 19.5. This one is in the 42nd percentile – i.e., 42% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 215,010 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 79% of its contemporaries.
We're also able to compare this research output to 99 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 54% of its contemporaries.