| Title |
Nascent-Seq Indicates Widespread Cotranscriptional RNA Editing in Drosophila
|
|---|---|
| Published in |
Molecular Cell, May 2012
|
| DOI | 10.1016/j.molcel.2012.05.002 |
| Pubmed ID | |
| Authors | |
| Abstract |
The RNA editing enzyme ADAR chemically modifies adenosine (A) to inosine (I), which is interpreted by the ribosome as a guanosine. Here we assess cotranscriptional A-to-I editing in Drosophila by isolating nascent RNA from adult fly heads and subjecting samples to high throughput sequencing. There are a large number of edited sites within nascent exons. Nascent RNA from an ADAR-null strain was also sequenced, indicating that almost all A-to-I events require ADAR. Moreover, mRNA editing levels correlate with editing levels within the cognate nascent RNA sequence, indicating that the extent of editing is set cotranscriptionally. Surprisingly, the nascent data also identify an excess of intronic over exonic editing sites. These intronic sites occur preferentially within introns that are poorly spliced cotranscriptionally, suggesting a link between editing and splicing. We conclude that ADAR-mediated editing is more widespread than previously indicated and largely occurs cotranscriptionally. |
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X Demographics
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| United States | 3 | 38% |
| United Kingdom | 1 | 13% |
| France | 1 | 13% |
| Japan | 1 | 13% |
| Canada | 1 | 13% |
| Unknown | 1 | 13% |
Demographic breakdown
| Type | Count | As % |
|---|---|---|
| Scientists | 5 | 63% |
| Members of the public | 3 | 38% |
Mendeley demographics
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| United States | 5 | 2% |
| Spain | 2 | <1% |
| Russia | 1 | <1% |
| Portugal | 1 | <1% |
| Japan | 1 | <1% |
| Hong Kong | 1 | <1% |
| United Kingdom | 1 | <1% |
| France | 1 | <1% |
| Czechia | 1 | <1% |
| Other | 2 | <1% |
| Unknown | 206 | 93% |
Demographic breakdown
| Readers by professional status | Count | As % |
|---|---|---|
| Researcher | 56 | 25% |
| Student > Ph. D. Student | 49 | 22% |
| Student > Bachelor | 23 | 10% |
| Professor > Associate Professor | 16 | 7% |
| Student > Doctoral Student | 14 | 6% |
| Other | 35 | 16% |
| Unknown | 29 | 13% |
| Readers by discipline | Count | As % |
|---|---|---|
| Agricultural and Biological Sciences | 118 | 53% |
| Biochemistry, Genetics and Molecular Biology | 53 | 24% |
| Computer Science | 4 | 2% |
| Medicine and Dentistry | 4 | 2% |
| Neuroscience | 3 | 1% |
| Other | 9 | 4% |
| Unknown | 31 | 14% |