| Title |
Deconvolution of Targeted Protein–Protein Interaction Maps
|
|---|---|
| Published in |
Journal of Proteome Research, July 2012
|
| DOI | 10.1021/pr300137n |
| Pubmed ID | |
| Authors | |
| Abstract |
Current proteomic techniques allow researchers to analyze chosen biological pathways or an ensemble of related protein complexes at a global level via the measure of physical protein-protein interactions by affinity purification mass spectrometry (AP-MS). Such experiments yield information-rich but complex interaction maps whose unbiased interpretation is challenging. Guided by current knowledge on the modular structure of protein complexes, we propose a novel statistical approach, named BI-MAP, complemented by software tools and a visual grammar to present the inferred modules. We show that the BI-MAP tools can be applied from small and very detailed maps to large, sparse, and much noisier data sets. The BI-MAP tool implementation and test data are made freely available. |
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