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Single nucleotide in the MTF-1 binding site can determine metal-specific transcription activation

Overview of attention for article published in Proceedings of the National Academy of Sciences of the United States of America, September 2012
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Article details
Title
Single nucleotide in the MTF-1 binding site can determine metal-specific transcription activation
Published in
Proceedings of the National Academy of Sciences of the United States of America, September 2012
DOI 10.1073/pnas.1207737109
Pubmed ID
Authors
Abstract

Cells respond to changes in environment by shifting their gene expression profile to deal with the new conditions. The cellular response to changes in metal homeostasis is an important example of this. Transition metals such as iron, zinc, and copper are essential micronutrients but other metals such as cadmium are simply toxic. The cell must maintain metal concentrations in a window that supports efficient metabolic function but must also protect against the damaging effects of high concentrations of these metals. One way a cell regulates metal homeostasis is to control genes involved in metal mobilization and storage. Much of this regulation occurs at the level of transcription and the protein most responsible for this is the conserved metal responsive transcription factor 1 (MTF-1). Interestingly, the nature of the changes in the gene expression profile depends on the type of exposure. The cell somehow senses the kind of the metal challenge and responds appropriately. We have been using the Drosophila system to try to understand the mechanism of this metal discrimination. Using genome-wide mapping of MTF-1 binding under different metal stresses we find that, surprisingly, MTF-1 chooses different DNA binding sites depending on the specific nature of the metal insult. We also find that the type of binding site chosen is an important component of the capability to induce the metal-specific transcription activation.

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X Demographics

X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 33 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Geographical breakdown
Country Count As %
Sri Lanka 1 3%
Unknown 32 97%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Student > Ph. D. Student 11 33%
Researcher 8 24%
Student > Master 3 9%
Professor > Associate Professor 3 9%
Other 2 6%
Other 4 12%
Unknown 2 6%
Readers by discipline
Readers by discipline Count As %
Agricultural and Biological Sciences 16 48%
Biochemistry, Genetics and Molecular Biology 11 33%
Medicine and Dentistry 2 6%
Environmental Science 1 3%
Pharmacology, Toxicology and Pharmaceutical Science 1 3%
Other 0 0%
Unknown 2 6%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 01 October 2012.
All research outputs
#27,726,607
of 34,360,257 outputs
Outputs from Proceedings of the National Academy of Sciences of the United States of America
#113,067
of 118,929 outputs
Outputs of similar age
#183,174
of 227,806 outputs
Outputs of similar age from Proceedings of the National Academy of Sciences of the United States of America
#888
of 960 outputs
Altmetric has tracked 34,360,257 research outputs across all sources so far. This one is in the 16th percentile – i.e., 16% of other outputs scored the same or lower than it.
So far Altmetric has tracked 118,929 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 40.1. This one is in the 4th percentile – i.e., 4% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 227,806 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 17th percentile – i.e., 17% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 960 others from the same source and published within six weeks on either side of this one. This one is in the 6th percentile – i.e., 6% of its contemporaries scored the same or lower than it.