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Transcriptional burst frequency and burst size are equally modulated across the human genome

Overview of attention for article published in Proceedings of the National Academy of Sciences of the United States of America, October 2012
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (94th percentile)
  • Good Attention Score compared to outputs of the same age and source (77th percentile)

Mentioned by

blogs
1 blog
twitter
8 X users
patent
4 patents
wikipedia
2 Wikipedia pages

Readers on

mendeley
410 Mendeley
citeulike
5 CiteULike
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Article details
Title
Transcriptional burst frequency and burst size are equally modulated across the human genome
Published in
Proceedings of the National Academy of Sciences of the United States of America, October 2012
DOI 10.1073/pnas.1213530109
Pubmed ID
Authors
Abstract

Gene expression occurs either as an episodic process, characterized by pulsatile bursts, or as a constitutive process, characterized by a Poisson-like accumulation of gene products. It is not clear which mode of gene expression (constitutive versus bursty) predominates across a genome or how transcriptional dynamics are influenced by genomic position and promoter sequence. Here, we use time-lapse fluorescence microscopy to analyze 8,000 individual human genomic loci and find that at virtually all loci, episodic bursting--as opposed to constitutive expression--is the predominant mode of expression. Quantitative analysis of the expression dynamics at these 8,000 loci indicates that both the frequency and size of the transcriptional bursts varies equally across the human genome, independent of promoter sequence. Strikingly, weaker expression loci modulate burst frequency to increase activity, whereas stronger expression loci modulate burst size to increase activity. Transcriptional activators such as trichostatin A (TSA) and tumor necrosis factor α (TNF) only modulate burst size and frequency along a constrained trend line governed by the promoter. In summary, transcriptional bursting dominates across the human genome, both burst frequency and burst size vary by chromosomal location, and transcriptional activators alter burst frequency and burst size, depending on the expression level of the locus.

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X Demographics

X Demographics

The data shown below were collected from the profiles of 8 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley demographics

Mendeley demographics

The data shown below were compiled from readership statistics for 410 Mendeley readers of this research output. Click here to see the associated Mendeley record.
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Geographical breakdown

Geographical breakdown
Country Count As %
United States 9 2%
Portugal 3 <1%
United Kingdom 2 <1%
France 2 <1%
India 1 <1%
Denmark 1 <1%
Germany 1 <1%
Switzerland 1 <1%
Unknown 390 95%

Demographic breakdown

Readers by professional status
Readers by professional status Count As %
Student > Ph. D. Student 120 29%
Researcher 75 18%
Student > Bachelor 37 9%
Student > Master 36 9%
Student > Doctoral Student 21 5%
Other 51 12%
Unknown 70 17%
Readers by discipline
Readers by discipline Count As %
Agricultural and Biological Sciences 123 30%
Biochemistry, Genetics and Molecular Biology 121 30%
Physics and Astronomy 27 7%
Medicine and Dentistry 14 3%
Engineering 12 3%
Other 36 9%
Unknown 77 19%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 23. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 11 May 2026.
All research outputs
#2,082,551
of 34,745,622 outputs
Outputs from Proceedings of the National Academy of Sciences of the United States of America
#25,554
of 119,644 outputs
Outputs of similar age
#12,034
of 230,694 outputs
Outputs of similar age from Proceedings of the National Academy of Sciences of the United States of America
#212
of 941 outputs
Altmetric has tracked 34,745,622 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 93rd percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 119,644 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 40.2. This one has done well, scoring higher than 78% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 230,694 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 94% of its contemporaries.
We're also able to compare this research output to 941 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 77% of its contemporaries.